hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-23002646/chunk_1/iprscan-20080811-23002646.nocrc
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Query sequence: ha04833
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00317                                                 152.5    4.2e-41   1
SM00249                                                 138.4    7.8e-37   5
SM00293                                                 131.3      1e-34   2
SM00570                                                  84.2    1.6e-20   1
SM00508                                                  27.5     0.0019   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00293      1/2     274   337 ..     1    84 []    57.5  1.7e-12
SM00249      1/5     709   752 ..     1    39 []    38.7  7.6e-07
SM00249      2/5     757   804 ..     1    39 []    19.0     0.68
SM00249      3/5     805   857 ..     1    39 []     6.8      8.6
SM00249      4/5     922   959 ..     1    39 []    27.8   0.0015
SM00293      2/2     964  1026 ..     1    84 []    73.8  2.2e-17
SM00570      1/1    1099  1150 ..     1    62 []    84.2  1.6e-20
SM00317      1/1    1151  1274 ..     1   114 []   152.5  4.2e-41
SM00508      1/1    1275  1291 ..     1    17 []    27.5   0.0019
SM00249      5/5    1329  1372 ..     1    39 []    46.1  4.8e-09

Alignments of top-scoring domains:
SM00293: domain 1 of 2, from 274 to 337: score 57.5, E = 1.7e-12
                   *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk
                      f+ GDlVw K++ +PwWP++v s + + +                  
     ha04833   274    FQVGDLVWSKVGTYPWWPCMVSSDPQLEVHTK--------------- 305  

                   leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-*
                         n r + +y+V+FF + + rawv+ +++ ++    
     ha04833   306 -----INTRGAREYHVQFFSNQPERAWVHEKRVREYK    337  

SM00249: domain 1 of 5, from 709 to 752: score 38.7, E = 7.6e-07
                   *->yC.vCgk..g.llqCdkgCdrwyHv.Clgppleepdg.wyCprCk<-
                      +C++C +++++l+ C++ C++++H++Clg++ + pd++++C +Ck  
     ha04833   709    VCqICESsgDsLIPCEGECCKHFHLeCLGLASL-PDSkFICMECK   752  

                   *
                    
     ha04833     -   -    

SM00249: domain 2 of 5, from 757 to 804: score 19.0, E = 0.68
                   *->yC.vCgk..g.llqCd.kgCdrwyHv.Clgpple..epdg.wyCprC
                       C  C+ ++ +   C+ + C++ yH  C++  ++   ++++++Cp++
     ha04833   757    PCfSCKVsgKdVKRCSvGACGKFYHEaCVRKFPTaiFESKgFRCPQH 803  

                   k<-*
                   +   
     ha04833   804 C    804  

SM00249: domain 3 of 5, from 805 to 857: score 6.8, E = 8.6
                   *->yC.vCgk.........g.llqCdkgCdrwyHv...Clgpple.epdg
                       C+ C  +++ ++ ++g+++ C  +C+++yH ++ C       + + 
     ha04833   805    -CsACSMekdihkaskGrMMRCL-RCPVAYHSgdaCIAAGSMlVSSY 849  

                   .wyCprCk<-*
                     +C++++   
     ha04833   850 iLICSNHS    857  

SM00249: domain 4 of 5, from 922 to 959: score 27.8, E = 0.0015
                   *->yCvCgk.g.llqCdkgCdrwyHv.Clgppleepdg.wyCprCk<-*
                         C k+g+ll+C+ +C+ ++H++Cl+++++  +g w C+ Ck   
     ha04833   922    --KCEKgGrLLCCE-SCPASFHPeCLSIEMP--EGcWNCNDCK    959  

SM00293: domain 2 of 2, from 964 to 1026: score 73.8, E = 2.2e-17
                   *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk
                      +++  +Vw+K + ++wWPA++++p+++p ni                
     ha04833   964    LHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQ--------------- 995  

                   leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-*
                          k++ + +pV+FFg++d+ +wv++ ++fP+    
     ha04833   996 -----GLKHDLGDFPVFFFGSHDY-YWVHQGRVFPYV    1026 

SM00570: domain 1 of 1, from 1099 to 1150: score 84.2, E = 1.6e-20
                   *->ndimtCeCkplddDgelkGegaCgedsdClNRmmElliECsDpssCp
                       +i+ C+Ckp d       e++Cg +s+ClNRm  l  EC+ p++Cp
     ha04833  1099    SEIPRCNCKPAD-------ENPCGLESECLNRM--LQYECH-PQVCP 1135 

                   cGsyCsNQrFQkrqy<-*
                   +G++C+NQ+F+kr y   
     ha04833  1136 AGDRCQNQCFTKRLY    1150 

SM00317: domain 1 of 1, from 1151 to 1274: score 152.5, E = 4.2e-41
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                      ++ e+ k++ +GwGlr++++I+kGef+ eyvGe+i++++ + + ++ 
     ha04833  1151    PDAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIdeeecrlrikra 1197 

                   .......fylfd.....ciDatranggkGniarfiNHSCePNcelifvev
                   ++++ ++fy+   ++++ iDa      kGn++rf+NHSC+PNce++++ v
     ha04833  1198 hensvtnFYMLTvtkdrIIDAGP----KGNYSRFMNHSCNPNCETQKWTV 1243 

                   dgfdprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                   +g          d r+++fAl dI++G ELt++Y+ d+ g+   
     ha04833  1244 NG----------DVRVGLFALCDIPAGMELTFNYNLDCLGN    1274 

SM00508: domain 1 of 1, from 1275 to 1291: score 27.5, E = 0.0019
                   *->kkqpClCGaanCrGfLg<-*
                       + +C+CGa nC+GfLg   
     ha04833  1275    GRTECHCGADNCSGFLG    1291 

SM00249: domain 5 of 5, from 1329 to 1372: score 46.1, E = 4.8e-09
                   *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgppleepdg.wyCprCk<-
                      yC  Cg++g+l+ Cd+k C+++yH+ Cl+++ + p g+w Cp+++  
     ha04833  1329    YCfQCGDgGeLVMCDkKDCPKAYHLlCLNLTQP-PYGkWECPWHQ   1372 

                   *
                    
     ha04833     -   -    

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