hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-23060661/chunk_1/iprscan-20080811-23060661.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha04835 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08441.2.fs Integrin alpha 493.1 2.1e-149 1 PF08441.2.ls Integrin alpha 494.8 9.3e-146 1 PF00092.18.fs von Willebrand factor type A domain 169.6 3.7e-53 1 PF00092.18.ls von Willebrand factor type A domain 171.6 1.9e-48 1 PF01839.13.fs FG-GAP repeat 66.0 2.3e-18 3 PF01839.13.ls FG-GAP repeat 71.6 2.3e-18 3 PF00357.10.fs Integrin alpha cytoplasmic region 28.4 1.1e-08 1 PF00357.10.ls Integrin alpha cytoplasmic region 30.4 5.9e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00092.18.fs 1/1 163 341 .. 1 195 [] 169.6 3.7e-53 PF00092.18.ls 1/1 163 341 .. 1 195 [] 171.6 1.9e-48 PF01839.13.fs 1/3 470 507 .. 1 36 [] 21.2 2.8e-05 PF01839.13.ls 1/3 470 507 .. 1 36 [] 23.2 0.00088 PF01839.13.ls 2/3 534 568 .. 1 36 [] 29.8 8.6e-06 PF01839.13.fs 2/3 534 568 .. 1 36 [] 28.0 2.9e-07 PF08441.2.ls 1/1 627 1045 .. 1 483 [] 494.8 9.3e-146 PF08441.2.fs 1/1 627 1045 .. 1 483 [] 493.1 2.1e-149 PF00357.10.fs 1/1 1142 1156 .. 1 15 [] 28.4 1.1e-08 PF00357.10.ls 1/1 1142 1156 .. 1 15 [] 30.4 5.9e-06 Alignments of top-scoring domains: PF00092.18.fs: domain 1 of 1, from 163 to 341: score 169.6, E = 3.7e-53 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY Di+Fl+DgSgSi + + F+++k+Fv++++e +l + +t ++l+qY ha04835 163 DIAFLIDGSGSIIPHD-FRRMKEFVSTVME-QL--KKSKTLFSLMQY 205 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs s + r++f+++++++ + ++v k +++l G T+ t++++++++++lf ha04835 206 SEEFRIHFTFKEFQNNPNPRSLV-KPITQLLGRTH-TATGIRKVVRELFN 253 stMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkkgvg ++g+R+ na k+l+++TDG+ ++++ ++ ++ +d+ g ha04835 254 I-------TNGARK-NAFKILVVITDGEKFGDPLGYeDVIPEADR---EG 292 itvfavGvG....gdvdeaeLr.iasepcseghvfyvedfdalwlqlqdi ++++++GvG+ ++ +++eL++ias+p +hvf v +f+a l+ +i ha04835 293 VIRYVIGVGdafrSEKSRQELNtIASKP-PRDHVFQVNNFEA--LK--TI 337 qeql<-* q+ql ha04835 338 QNQL 341 PF00092.18.ls: domain 1 of 1, from 163 to 341: score 171.6, E = 1.9e-48 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY Di+Fl+DgSgSi + + F+++k+Fv++++e +l + +t ++l+qY ha04835 163 DIAFLIDGSGSIIPHD-FRRMKEFVSTVME-QL--KKSKTLFSLMQY 205 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs s + r++f+++++++ + ++v k +++l G T+ t++++++++++lf ha04835 206 SEEFRIHFTFKEFQNNPNPRSLV-KPITQLLGRTH-TATGIRKVVRELFN 253 stMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkkgvg ++g+R+ na k+l+++TDG+ ++++ ++ ++ +d+ g ha04835 254 I-------TNGARK-NAFKILVVITDGEKFGDPLGYeDVIPEADR---EG 292 itvfavGvG....gdvdeaeLr.iasepcseghvfyvedfdalwlqlqdi ++++++GvG+ ++ +++eL++ias+p +hvf v +f+a l+ +i ha04835 293 VIRYVIGVGdafrSEKSRQELNtIASKP-PRDHVFQVNNFEA--LK--TI 337 qeql<-* q+ql ha04835 338 QNQL 341 PF01839.13.fs: domain 1 of 3, from 470 to 507: score 21.2, E = 2.8e-05 *->fgssvaagDlnGDGrpDlvv.gaPgadggt.dgsvyll<-* fg+s++ +D++ +G +Dlv+ gaP +++ t++g+v++ ha04835 470 FGASLCSVDVDSNGSTDLVLiGAPHYYEQTrGGQVSVC 507 PF01839.13.ls: domain 1 of 3, from 470 to 507: score 23.2, E = 0.00088 *->fgssvaagDlnGDGrpDlvv.gaPgadggt.dgsvyll<-* fg+s++ +D++ +G +Dlv+ gaP +++ t++g+v++ ha04835 470 FGASLCSVDVDSNGSTDLVLiGAPHYYEQTrGGQVSVC 507 PF01839.13.ls: domain 2 of 3, from 534 to 568: score 29.8, E = 8.6e-06 *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-* +++ ++gD+nGD ++D+++gaP g +d++g+vyl+ ha04835 534 GAALTVLGDVNGDKLTDVAIGAP----GEeDnrGAVYLF 568 PF01839.13.fs: domain 2 of 3, from 534 to 568: score 28.0, E = 2.9e-07 *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-* +++ ++gD+nGD ++D+++gaP g +d++g+vyl+ ha04835 534 GAALTVLGDVNGDKLTDVAIGAP----GEeDnrGAVYLF 568 PF08441.2.ls: domain 1 of 1, from 627 to 1045: score 494.8, E = 9.3e-146 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg s+PV++v+a ++f+P+e+ +++++C++++++ +++ v+vC++v++ ha04835 627 SQPVLRVKAIMEFNPREVARNVFECNDQVVK-GKEAGEVRVCLHVQK 672 ksvdqlg..pqqivlnytLqLDsarkkkrlisRalFldetksstltrnlv ++ d+l++++ q+v++y+L+LDs +r sRa+F+ etk+st ++++v ha04835 673 STRDRLRegQIQSVVTYDLALDS----GRPHSRAVFN-ETKNSTRRQTQV 717 lgnqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradl lg+ ++Cet+kl+L++ c++D +sPIv+rln+sL +g+p + + ha04835 718 LGL--TQTCETLKLQLPN--CIEDPVSPIVLRLNFSL-----VGTPLSAF 758 pgllqPvLnqysptsitfqipFeKnCGeDniCvaDLqLsvsfslregtpt +l +PvL+ + ++ +t+ pFeKnCG+DniC++DL++++sf++ ++ ha04835 759 GNL-RPVLAEDAQRLFTALFPFEKNCGNDNICQDDLSITFSFMS---LDC 804 LvvGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverl..qnpe LvvG+++e+++++tv+N+ GEd+Y +q+++ +P Ls++kv++l++q+ + ha04835 805 LVVGGPREFNVTVTVRND-GEDSYRTQVTFFFPLDLSYRKVSTLqnQRSQ 853 sekplsCesnke....ngtrsvtCdlGnPimkagsqvtftitFdvsslsg ++++l Ces ++++ +++++s++C++++Pi+ ++s+vtf itFdv s+++ ha04835 854 RSWRLACESASStevsGALKSTSCSINHPIFPENSEVTFNITFDVDSKAS 903 lgdslefdlqatStNeepsenlndntvtleipVkyeadlsisGvsepsqv lg++l++++++tS+N++p ++n+++++le+pVky++++ + ++ s++ ha04835 904 LGNKLLLKANVTSENNMP--RTNKTEFQLELPVKYAVYMVV-TSHGVSTK 950 ffngsnwegesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqw ++n++ + e+ + +++h Y+v NlG++ ++p +sl++ + ha04835 951 YLNFT---------ASENTS---RVMQHQYQVSNLGQR-SLP-ISLVFLV 986 PyelasdsngkvpllYllevqt.gsksegnvsCspqnlninplnldlsss P++ +n +++ +v+ ++ + + +C++ + ha04835 987 PVR----LNQT-VIWDRPQVTFsE---NLSSTCHTK----------ERLP 1018 gttprleallrnsrerqeigesevaqsykvLdCsssnasClrirC<-* +++++l++l+++ +v++C s+a C+ri+C ha04835 1019 SHSDFLAELRKA----------------PVVNC--SIAVCQRIQC 1045 PF08441.2.fs: domain 1 of 1, from 627 to 1045: score 493.1, E = 2.1e-149 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg s+PV++v+a ++f+P+e+ +++++C++++++ +++ v+vC++v++ ha04835 627 SQPVLRVKAIMEFNPREVARNVFECNDQVVK-GKEAGEVRVCLHVQK 672 ksvdqlg..pqqivlnytLqLDsarkkkrlisRalFldetksstltrnlv ++ d+l++++ q+v++y+L+LDs +r sRa+F+ etk+st ++++v ha04835 673 STRDRLRegQIQSVVTYDLALDS----GRPHSRAVFN-ETKNSTRRQTQV 717 lgnqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradl lg+ ++Cet+kl+L++ c++D +sPIv+rln+sL +g+p + + ha04835 718 LGL--TQTCETLKLQLPN--CIEDPVSPIVLRLNFSL-----VGTPLSAF 758 pgllqPvLnqysptsitfqipFeKnCGeDniCvaDLqLsvsfslregtpt +l +PvL+ + ++ +t+ pFeKnCG+DniC++DL++++sf++ ++ ha04835 759 GNL-RPVLAEDAQRLFTALFPFEKNCGNDNICQDDLSITFSFMS---LDC 804 LvvGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverl..qnpe LvvG+++e+++++tv+N+ GEd+Y +q+++ +P Ls++kv++l++q+ + ha04835 805 LVVGGPREFNVTVTVRND-GEDSYRTQVTFFFPLDLSYRKVSTLqnQRSQ 853 sekplsCesnke....ngtrsvtCdlGnPimkagsqvtftitFdvsslsg ++++l Ces ++++ +++++s++C++++Pi+ ++s+vtf itFdv s+++ ha04835 854 RSWRLACESASStevsGALKSTSCSINHPIFPENSEVTFNITFDVDSKAS 903 lgdslefdlqatStNeepsenlndntvtleipVkyeadlsisGvsepsqv lg++l++++++tS+N++p ++n+++++le+pVky++++ + ++ s++ ha04835 904 LGNKLLLKANVTSENNMP--RTNKTEFQLELPVKYAVYMVV-TSHGVSTK 950 ffngsnwegesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqw ++n++ + e+ + +++h Y+v NlG++ ++p +sl++ + ha04835 951 YLNFT---------ASENTS---RVMQHQYQVSNLGQR-SLP-ISLVFLV 986 PyelasdsngkvpllYllevqt.gsksegnvsCspqnlninplnldlsss P++ +n +++ +v+ ++ + + +C++ + ha04835 987 PVR----LNQT-VIWDRPQVTFsE---NLSSTCHTK----------ERLP 1018 gttprleallrnsrerqeigesevaqsykvLdCsssnasClrirC<-* +++++l++l+++ +v++C s+a C+ri+C ha04835 1019 SHSDFLAELRKA----------------PVVNC--SIAVCQRIQC 1045 PF00357.10.fs: domain 1 of 1, from 1142 to 1156: score 28.4, E = 1.1e-08 *->KcGFFKRkykpqeee<-* K+GFFKR+yk++++e ha04835 1142 KLGFFKRQYKDMMSE 1156 PF00357.10.ls: domain 1 of 1, from 1142 to 1156: score 30.4, E = 5.9e-06 *->KcGFFKRkykpqeee<-* K+GFFKR+yk++++e ha04835 1142 KLGFFKRQYKDMMSE 1156 //