hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-23060661/chunk_1/iprscan-20080811-23060661.nocrc
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Query sequence: ha04835
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
SM00327                                                 154.9    8.2e-42   1
SM00191                                                 141.6    8.3e-38   5

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
SM00191         1/5      43    93 ..     1    56 []     5.1       62
SM00327         1/1     161   346 ..     1   193 []   154.9  8.2e-42
SM00191         2/5     413   462 ..     1    56 []    16.1      3.8
SM00191         3/5     466   523 ..     1    56 []    45.0    1e-08
SM00191         4/5     529   583 ..     1    56 []    61.5  1.1e-13
SM00191         5/5     592   646 ..     1    56 []    13.9      6.7

Alignments of top-scoring domains:
SM00191: domain 1 of 5, from 43 to 93: score 5.1, E = 62
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr........GaVYvyf
                       +  FG sv+++             ++vGAP++    +++G  Y + 
     ha04835    43    NARGFGQSVVQLQG--------SR-VVVGAPQeivaanqrGSLYQCD 80   

                   gssnsgggrciplqnls<-*
                    s    +g+c+p+       
     ha04835    81 YS----TGSCEPIRLQV    93   

SM00327: domain 1 of 1, from 161 to 346: score 154.9, E = 8.2e-42
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld..gdrvglvqFss
                      + D+ fl+DgSgS+ + +f ++kefv++++eql ++++ ++l+q+s+
     ha04835   161    DSDIAFLIDGSGSIIPHDFRRMKEFVsTVMEQLKksKTLFSLMQYSE 207  

                   dvrvefpln.sqskdallealaslsykglkdyslgggTnlg.ALqyalen
                   ++r+ f+++++q+    ++ ++ + +       l g T++++++++++++
     ha04835   208 EFRIHFTFKeFQNNPNPRSLVKPITQ-------LLGRTHTAtGIRKVVRE 250  

                   lfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaakel
                   lf+ ++g r++a          k+l++iTDGe      dp  +++++ e+
     ha04835   251 LFNITNGaRKNA---------FKILVVITDGEKFG---DPLGYEDVIPEA 288  

                   krsgvkvfvigvgna.....de.elkeiasep.gehvffdvsdvedlpsl
                    r+gv+ +vigvg+a ++++ ++el++ias+p+++hvf  v ++e+l  +
     ha04835   289 DREGVIRYVIGVGDAfrsekSRqELNTIASKPpRDHVFQ-VNNFEALKTI 337  

                   ldllidlll<-*
                      l + ++   
     ha04835   338 QNQLREKIF    346  

SM00191: domain 2 of 5, from 413 to 462: score 16.1, E = 3.8
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr....GaVYvyfgssn
                       ++y+Gy+ a +   n      ++ l+ GAPr ++ G V  ++++  
     ha04835   413    NDAYLGYAAA-IILRN----RVQS-LVLGAPRyqhiGLVAMFRQN-- 451  

                   sgggrciplqnls<-*
                     +g +++  n+    
     ha04835   452 --TGMWESNANVK    462  

SM00191: domain 3 of 5, from 466 to 523: score 45.0, E = 1e-08
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.......GaVYvyfg
                      +g+yFG s++  +D++ +  G +Dl+l+GAP   +++++G+V v++ 
     ha04835   466    IGAYFGASLC-SVDVDSN--GSTDLVLIGAPHyyeqtrgGQVSVCPL 509  

                   ssnsgggrciplqnls<-*
                    ++    r++   +l    
     ha04835   510 PRG--RARWQCDAVLY    523  

SM00191: domain 4 of 5, from 529 to 583: score 61.5, E = 1.1e-13
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.....GaVYvyfgss
                      p+++FG +++ +gD+ngD    +D +++GAP++++++GaVY+++g+s
     ha04835   529    PWGRFGAALTVLGDVNGD--KLTD-VAIGAPGeednrGAVYLFHGTS 572  

                   nsgggrciplqnls<-*
                      g++ +p++  +   
     ha04835   573 ---GSGISPSHSQR    583  

SM00191: domain 5 of 5, from 592 to 646: score 13.9, E = 6.7
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.....GaVYvyfgss
                         yFG s+ g+ Dl  D  G  D l vGA ++    +  +v+++ +
     ha04835   592    RLQYFGQSLSGGQDLTMD--GLVD-LTVGAQGhvlllRSQPVLRVKA 635  

                   nsgggrciplqnls<-*
                         ++p  + +   
     ha04835   636 I---MEFNPREVAR    646  

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