hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-23125089/chunk_1/iprscan-20080811-23125089.nocrc
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Query sequence: ha04849
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF09038.1.fs Tumour suppressor p53-binding protein-1    344.1   6.4e-106   1
PF09038.1.ls Tumour suppressor p53-binding protein-1    346.1   5.4e-101   1
PF00533.16.fs BRCA1 C Terminus (BRCT) domain              38.0      2e-10   2
PF00533.16.ls BRCA1 C Terminus (BRCT) domain              31.4    2.9e-06   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF09038.1.ls   1/1    1497  1618 ..     1   122 []   346.1 5.4e-101
PF09038.1.fs   1/1    1497  1618 ..     1   122 []   344.1 6.4e-106
PF00533.16.fs   1/2    1807  1847 ..    59    96 .]     8.4    0.075
PF00533.16.ls   1/1    1876  1963 ..     1    96 []    31.4  2.9e-06
PF00533.16.fs   2/2    1876  1963 ..     1    96 []    29.6  5.6e-08

Alignments of top-scoring domains:
PF09038.1.ls: domain 1 of 1, from 1497 to 1618: score 346.1, E = 5.4e-101
                   *->GssFvGLRvvAKWssnGYFYsGkitkDaGeGkykLlFDDGYECdvlG
                      G+sFvGLRvvAKWssnGYFYsGkit+D+G+GkykLlFDDGYECdvlG
     ha04849  1497    GNSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLG 1543 

                   KDiLLCDPiPLdtEvtALseDEYFsaGvvkgHkkeseELyYsiEKdGqRk
                   KDiLLCDPiPLdtEvtALseDEYFsaGvvkgH+kes+ELyYsiEK+GqRk
     ha04849  1544 KDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIEKEGQRK 1593 

                   WYkRkAviLsLEqGnrLREqygLGP<-*
                   WYkR+AviLsLEqGnrLREqygLGP   
     ha04849  1594 WYKRMAVILSLEQGNRLREQYGLGP    1618 

PF09038.1.fs: domain 1 of 1, from 1497 to 1618: score 344.1, E = 6.4e-106
                   *->GssFvGLRvvAKWssnGYFYsGkitkDaGeGkykLlFDDGYECdvlG
                      G+sFvGLRvvAKWssnGYFYsGkit+D+G+GkykLlFDDGYECdvlG
     ha04849  1497    GNSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLG 1543 

                   KDiLLCDPiPLdtEvtALseDEYFsaGvvkgHkkeseELyYsiEKdGqRk
                   KDiLLCDPiPLdtEvtALseDEYFsaGvvkgH+kes+ELyYsiEK+GqRk
     ha04849  1544 KDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIEKEGQRK 1593 

                   WYkRkAviLsLEqGnrLREqygLGP<-*
                   WYkR+AviLsLEqGnrLREqygLGP   
     ha04849  1594 WYKRMAVILSLEQGNRLREQYGLGP    1618 

PF00533.16.fs: domain 1 of 2, from 1807 to 1847: score 8.4, E = 0.075
                   *->ki.e.i.ifigs.leagtskkllkakalgipivteeWlldci<-*
                      ++++ +++  + ++  +t+k + + +a gip+v++ W+ d+    
     ha04849  1807    QCnTaYqCLLIAdQHCRTRK-YFLCLASGIPCVSHVWVHDSC    1847 

PF00533.16.ls: domain 1 of 1, from 1876 to 1963: score 31.4, E = 2.9e-06
                   *->p.eklfkgltfvitggldgfereele.leelieklGGkv........
                      p+e++f++l++ +    +++++++le + e++   G+   ++++++ 
     ha04849  1876    PrENPFQNLKVLL---VSDQQQNFLElWSEILMTGGAASvkqhhssa 1919 

                   .tsslskktthvislvgepkypkieiifigsleagtskkllkakalgipi
                   + +++   +  v+  v +p            +++  s  l+ a al +p+
     ha04849  1920 hNKDIALGVFDVV--VTDP------------SCPA-SV-LKCAEALQLPV 1953 

                   vteeWlldci<-*
                   v+ eW+++c+   
     ha04849  1954 VSQEWVIQCL    1963 

PF00533.16.fs: domain 2 of 2, from 1876 to 1963: score 29.6, E = 5.6e-08
                   *->p.eklfkgltfvitggldgfereele.leelieklGGkv........
                      p+e++f++l++ +    +++++++le + e++   G+   ++++++ 
     ha04849  1876    PrENPFQNLKVLL---VSDQQQNFLElWSEILMTGGAASvkqhhssa 1919 

                   .tsslskktthvislvgepkypkieiifigsleagtskkllkakalgipi
                   + +++   +  v+  v +p            +++  s  l+ a al +p+
     ha04849  1920 hNKDIALGVFDVV--VTDP------------SCPA-SV-LKCAEALQLPV 1953 

                   vteeWlldci<-*
                   v+ eW+++c+   
     ha04849  1954 VSQEWVIQCL    1963 

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