hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-14293337/chunk_1/iprscan-20090618-14293337.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha06190 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 516.6 2.6e-152 1 PF07714.7.fs Protein tyrosine kinase 514.7 9.5e-152 1 PF00069.15.fs Protein kinase domain 147.8 7.1e-42 1 PF00069.15.ls Protein kinase domain 149.7 7.3e-42 1 PF00028.8.fs Cadherin domain 71.0 9.5e-20 2 PF00028.8.ls Cadherin domain 67.2 5e-17 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00028.8.fs 1/2 185 274 .. 1 107 [] 65.3 4e-18 PF00028.8.ls 1/1 185 274 .. 1 107 [] 67.2 5e-17 PF07714.7.fs 1/1 737 1018 .. 1 272 [] 514.7 9.5e-152 PF00069.15.fs 1/1 737 1018 .. 1 287 [] 147.8 7.1e-42 PF00069.15.ls 1/1 737 1018 .. 1 287 [] 149.7 7.3e-42 PF07714.7.ls 1/1 737 1018 .. 1 272 [] 516.6 2.6e-152 Alignments of top-scoring domains: PF00028.8.fs: domain 1 of 2, from 185 to 274: score 65.3, E = 4e-18 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +s++++En p + + ++++ ++ l+pN ++ Y++l+g+ g Fr ha06190 185 PSFRIRENRP-PGTFHQFRLLPVQF-LCPNISVAYRLLEGE-GLPFR 228 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + pd+ + +st++ LDRE++ ++YeL+ ++t ++ +++ ha06190 229 CAPDSLE----VSTRWALDREQR--EKYELVAVCTVHA--------GARE 264 statvtitVl<-* +++v V+ ha06190 265 EVVMVPFPVT 274 PF00028.8.ls: domain 1 of 1, from 185 to 274: score 67.2, E = 5e-17 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +s++++En p + + ++++ ++ l+pN ++ Y++l+g+ g Fr ha06190 185 PSFRIRENRP-PGTFHQFRLLPVQF-LCPNISVAYRLLEGE-GLPFR 228 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + pd+ + +st++ LDRE++ ++YeL+ ++t ++ +++ ha06190 229 CAPDSLE----VSTRWALDREQR--EKYELVAVCTVHA--------GARE 264 statvtitVl<-* +++v V+ ha06190 265 EVVMVPFPVT 274 PF07714.7.fs: domain 1 of 1, from 737 to 1018: score 514.7, E = 9.5e-152 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei l+lgk+LGeG+FG+V+k+t++ +g + ++VAVK+Lke +as++e ha06190 737 LVLGKTLGEGEFGKVVKATAFHlKGRAGYTTVAVKMLKE-NASPSE- 781 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd ++d+l+E +++k+ +Hp++++L+G+c++ ++P l++++Ey+++G+ ha06190 782 -LRDLLSEFNVLKQV-NHPHVIKLYGACSQ-DGP----LLLIVEYAKYGS 824 LldfLrkhr.....................egrpLtlkdLlsfalQiAkG L+ fLr+ r+ +++ ++++++++++ +++++r+Lt+ dL+sfa+Qi++G ha06190 825 LRGFLRESRkvgpgylgsggsrnsssldhpDERALTMGDLISFAWQISQG 874 MeYLesknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgg M+YL+++++vHRDLAARN+LV+e++++KIsDFGL+Rd+y++d Y +k++ ha06190 875 MQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSY-VKRSQ 923 gklPvkWmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsnee g++PvkWmA Esl++ ++t++SDVWSFGVlLWEi+tlG+ P Ypg+++e+ ha06190 924 GRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNP-YPGIPPER 972 vlellyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* + +ll + G+R++rP+nC++e+Y+lMlqCW+ +P++RP F+++ +L ha06190 973 LFNLL-KTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDL 1018 PF00069.15.fs: domain 1 of 1, from 737 to 1018: score 147.8, E = 7.1e-42 *->yelleklGsGsfGtV.....ykakhkgtgkiVAvKiikkrkekskkd ++l+++lG+G fG+V + + ++ k + +VAvK + k++++++++ ha06190 737 LVLGKTLGEGEFGKVvkataFHLKGRAGYTTVAVKML-KENASPSEL 782 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf + ++ E +lk ++Hp++++l++++ ++ l l+ Ey+ G +L ha06190 783 RDLLS--EFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYG----SLR 826 dyls...............e......trrkgpllfsedeakkialQilrg +l+++++ +++ ++++++++++ + ++++l ++ +++++a+Qi +g ha06190 827 GFLResrkvgpgylgsggsRnsssldHPDERAL--TMGDLISFAWQISQG 874 leYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls.t.sss. ++YL +++ +HRDL NIL+ +g Ki+DFGl++ +++++s+++ ha06190 875 MQYLAEMKLVHRDLAARNILVA-EGRK---MKISDFGLSRDVYeEdSYVk 920 lttfvGTpwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgev + +mA E l + y+t +DvWS+Gv+l+e +t G P++g ha06190 921 RSQGRIPVKWMAIESLF-DHIYTTQSDVWSFGVLLWEIVTlGGNPYPGI- 968 qdsldqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkc + +++++ l++ + ++p +s ee+ L+ c ha06190 969 -----PPERLFNLLKTGHRMERPDNCS-------------EEMYRLMLQC 1000 LnkDPskRltaeeilqHPwf<-* +++ P kR+ +++i ++ + ha06190 1001 WKQEPDKRPVFADISKD--L 1018 PF00069.15.ls: domain 1 of 1, from 737 to 1018: score 149.7, E = 7.3e-42 *->yelleklGsGsfGtV.....ykakhkgtgkiVAvKiikkrkekskkd ++l+++lG+G fG+V + + ++ k + +VAvK + k++++++++ ha06190 737 LVLGKTLGEGEFGKVvkataFHLKGRAGYTTVAVKML-KENASPSEL 782 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf + ++ E +lk ++Hp++++l++++ ++ l l+ Ey+ G +L ha06190 783 RDLLS--EFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYG----SLR 826 dyls...............e......trrkgpllfsedeakkialQilrg +l+++++ +++ ++++++++++ + ++++l ++ +++++a+Qi +g ha06190 827 GFLResrkvgpgylgsggsRnsssldHPDERAL--TMGDLISFAWQISQG 874 leYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls.t.sss. ++YL +++ +HRDL NIL+ +g Ki+DFGl++ +++++s+++ ha06190 875 MQYLAEMKLVHRDLAARNILVA-EGRK---MKISDFGLSRDVYeEdSYVk 920 lttfvGTpwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgev + +mA E l + y+t +DvWS+Gv+l+e +t G P++g ha06190 921 RSQGRIPVKWMAIESLF-DHIYTTQSDVWSFGVLLWEIVTlGGNPYPGI- 968 qdsldqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkc + +++++ l++ + ++p +s ee+ L+ c ha06190 969 -----PPERLFNLLKTGHRMERPDNCS-------------EEMYRLMLQC 1000 LnkDPskRltaeeilqHPwf<-* +++ P kR+ +++i ++ + ha06190 1001 WKQEPDKRPVFADISKD--L 1018 PF07714.7.ls: domain 1 of 1, from 737 to 1018: score 516.6, E = 2.6e-152 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei l+lgk+LGeG+FG+V+k+t++ +g + ++VAVK+Lke +as++e ha06190 737 LVLGKTLGEGEFGKVVKATAFHlKGRAGYTTVAVKMLKE-NASPSE- 781 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd ++d+l+E +++k+ +Hp++++L+G+c++ ++P l++++Ey+++G+ ha06190 782 -LRDLLSEFNVLKQV-NHPHVIKLYGACSQ-DGP----LLLIVEYAKYGS 824 LldfLrkhr.....................egrpLtlkdLlsfalQiAkG L+ fLr+ r+ +++ ++++++++++ +++++r+Lt+ dL+sfa+Qi++G ha06190 825 LRGFLRESRkvgpgylgsggsrnsssldhpDERALTMGDLISFAWQISQG 874 MeYLesknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgg M+YL+++++vHRDLAARN+LV+e++++KIsDFGL+Rd+y++d Y +k++ ha06190 875 MQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSY-VKRSQ 923 gklPvkWmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsnee g++PvkWmA Esl++ ++t++SDVWSFGVlLWEi+tlG+ P Ypg+++e+ ha06190 924 GRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNP-YPGIPPER 972 vlellyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* + +ll + G+R++rP+nC++e+Y+lMlqCW+ +P++RP F+++ +L ha06190 973 LFNLL-KTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDL 1018 //