hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-16042656/chunk_1/iprscan-20090525-16042656.nocrc
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Query sequence: ha06270s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF08824.1.ls Serine rich protein interaction domain      321.1    1.8e-93   1
PF08824.1.fs Serine rich protein interaction domain      319.3    6.4e-93   1
PF00018.18.fs SH3 domain                                   60.9    6.9e-16   1
PF00018.18.ls SH3 domain                                   61.7    2.2e-15   1
PF07653.7.fs Variant SH3 domain                           42.2    1.7e-11   1
PF07653.7.ls Variant SH3 domain                           43.9    4.9e-10   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00018.18.ls   1/1      78   135 ..     1    59 []    61.7  2.2e-15
PF00018.18.fs   1/1      78   130 ..     1    54 [.    60.9  6.9e-16
PF07653.7.fs   1/1      79   135 ..     1    69 []    42.2  1.7e-11
PF07653.7.ls   1/1      79   135 ..     1    69 []    43.9  4.9e-10
PF08824.1.fs   1/1     526   682 ..     1   168 []   319.3  6.4e-93
PF08824.1.ls   1/1     526   682 ..     1   168 []   321.1  1.8e-93

Alignments of top-scoring domains:
PF00018.18.ls: domain 1 of 1, from 78 to 135: score 61.7, E = 2.2e-15
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd..pgWWkgrlkgtg
                        ++ALYD +a+++dELsF+kGD++tvle++  + +gWW + l+   
   ha06270s1    78    VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQglDGWWLCSLH--- 121  

                   GkeGliPsNYVepv<-*
                   G++G++P N +      
   ha06270s1   122 GRQGIVPGNRLKIL    135  

PF00018.18.fs: domain 1 of 1, from 78 to 130: score 60.9, E = 6.9e-16
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd..pgWWkgrlkgtg
                        ++ALYD +a+++dELsF+kGD++tvle++  + +gWW + l+   
   ha06270s1    78    VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQglDGWWLCSLH--- 121  

                   GkeGliPsN<-*
                   G++G++P N   
   ha06270s1   122 GRQGIVPGN    130  

PF07653.7.fs: domain 1 of 1, from 79 to 135: score 42.2, E = 1.7e-11
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd...g
                      +++a+ d va ++++e      Ls++kGd+  V+    ++d  + +g
   ha06270s1    79    LAKALYDNVA-ESPDE------LSFRKGDIMTVL----EQDTQgldG 114  

                   wwegeslggGrrrRGlvPssaveel<-*
                   ww++++  +Gr   G vP + +++l   
   ha06270s1   115 WWLCSL--HGRQ--GIVPGNRLKIL    135  

PF07653.7.ls: domain 1 of 1, from 79 to 135: score 43.9, E = 4.9e-10
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd...g
                      +++a+ d va ++++e      Ls++kGd+  V+    ++d  + +g
   ha06270s1    79    LAKALYDNVA-ESPDE------LSFRKGDIMTVL----EQDTQgldG 114  

                   wwegeslggGrrrRGlvPssaveel<-*
                   ww++++  +Gr   G vP + +++l   
   ha06270s1   115 WWLCSL--HGRQ--GIVPGNRLKIL    135  

PF08824.1.fs: domain 1 of 1, from 526 to 682: score 319.3, E = 6.4e-93
                   *->LDLdaAlEtLarLQqtVesSvasLmsFAG.aGvsgkWRsreqPlEan
                      L+L++A+E+LarLQq+V+++va+L+++AG+aG++g+WRs+++P+E++
   ha06270s1   526    LELEVAVEALARLQQGVSATVAHLLDLAGsAGATGSWRSPSEPQEPL 572  

                   indIrrAvdrveaslrEfLeFArGavgNAaqltDrnLhaKLrrQLqkleD
                   ++d+++Av++v+++++E+LeFAr+avgNAa+++Dr+LhaKL+rQLqk+eD
   ha06270s1   573 VQDLQAAVAAVQSAVHELLEFARSAVGNAAHTSDRALHAKLSRQLQKMED 622  

                   sfQiLlqhseaLDacnaWSlnaLAtddkpqnCRkpDDLDRlvMvARtvPD
                   ++Q+L++h++aLDa++++S+++L            +DLDRlv+++R+vP+
   ha06270s1   623 VHQTLVAHGQALDAGRGGSGATL------------EDLDRLVACSRAVPE 660  

                   DaKqLaSfihGNAsLLFRRake<-*
                   DaKqLaSf+hGNAsLLFRR+k+   
   ha06270s1   661 DAKQLASFLHGNASLLFRRTKA    682  

PF08824.1.ls: domain 1 of 1, from 526 to 682: score 321.1, E = 1.8e-93
                   *->LDLdaAlEtLarLQqtVesSvasLmsFAG.aGvsgkWRsreqPlEan
                      L+L++A+E+LarLQq+V+++va+L+++AG+aG++g+WRs+++P+E++
   ha06270s1   526    LELEVAVEALARLQQGVSATVAHLLDLAGsAGATGSWRSPSEPQEPL 572  

                   indIrrAvdrveaslrEfLeFArGavgNAaqltDrnLhaKLrrQLqkleD
                   ++d+++Av++v+++++E+LeFAr+avgNAa+++Dr+LhaKL+rQLqk+eD
   ha06270s1   573 VQDLQAAVAAVQSAVHELLEFARSAVGNAAHTSDRALHAKLSRQLQKMED 622  

                   sfQiLlqhseaLDacnaWSlnaLAtddkpqnCRkpDDLDRlvMvARtvPD
                   ++Q+L++h++aLDa++++S+++L            +DLDRlv+++R+vP+
   ha06270s1   623 VHQTLVAHGQALDAGRGGSGATL------------EDLDRLVACSRAVPE 660  

                   DaKqLaSfihGNAsLLFRRake<-*
                   DaKqLaSf+hGNAsLLFRR+k+   
   ha06270s1   661 DAKQLASFLHGNASLLFRRTKA    682  

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