hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-23301701/chunk_1/iprscan-20080811-23301701.nocrc
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Query sequence: ha06616
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00195                                                  48.9    6.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00195    1/1       1    86 [.     1   172 []    48.9  6.5e-10

Alignments of top-scoring domains:
SM00195: domain 1 of 1, from 1 to 86: score 48.9, E = 6.5e-10
                   *->gpseilphlYLGsysdaseanlallkklgIthviNvteevpnnfelk
                                                                     
     ha06616     -    ----------------------------------------------- -    

                   kkndryytneyiskgsgftylqiPnvdDIyyhiawntetkiskyleeave
                                              D       +++++++ ++ e+++
     ha06616     1 --------------------------AD-------SPSQNLTRHFKESIK 17   

                   fIedaekkggkVLVHCqAGvSRSAtlviAYLMktrnlslrdAydfvyvYh
                   fI++++ +g  +LVHC+AGvSRS+tlviAY+M    + ++dA++ v    
     ha06616    18 FIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTV---- 63   

                   ikerRcpiisPNfgFlrQLieyerk<-*
                    +  R ++ +PN+gF+rQL+e+e+    
     ha06616    64 -RAGR-SCANPNVGFQRQLQEFEKH    86   

//