hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-23352765/chunk_1/iprscan-20080811-23352765.nocrc
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Query sequence: ha06676
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00170.11.fs bZIP transcription factor                       28.5      2e-07   1
PF00170.11.ls bZIP transcription factor                       30.0    7.8e-06   1
PF07716.5.ls Basic region leucine zipper                     18.7     0.0086   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07716.5.ls   1/1     489   547 ..     1    57 []    18.7   0.0086
PF00170.11.ls   1/1     490   554 ..     1    65 []    30.0  7.8e-06
PF00170.11.fs   1/1     491   554 ..     1    65 []    28.5    2e-07

Alignments of top-scoring domains:
PF07716.5.ls: domain 1 of 1, from 489 to 547: score 18.7, E = 0.0086
                   *->kddeyrd.rRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLL
                        +  rd rRr +N +AA+++R++k + + ele+ +  L+ e+++LL
     ha06676   489    QLALIRDiRRRGKNKVAAQNCRKRKLENIVELEQDLDHLKDEKEKLL 535  

                   .krqkveqLekE<-*
                   + + +++        
     ha06676   536 kEKGENDKSLHL    547  

PF00170.11.ls: domain 1 of 1, from 490 to 554: score 30.0, E = 7.8e-06
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
                       + ++  rR+ kN++AA+ +R+RK++ i eLe+  + L+ e ++L k
     ha06676   490    LALIRDIRRRGKNKVAAQNCRKRKLENIVELEQDLDHLKDEKEKLLK 536  

                   elerLkkevakLksenee<-*
                   e  +  k    Lk+++++   
     ha06676   537 EKGENDKSLHLLKKQLST    554  

PF00170.11.fs: domain 1 of 1, from 491 to 554: score 28.5, E = 2e-07
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
                       + ++  rR+ kN++AA+ +R+RK++ i eLe+  + L+ e ++L k
     ha06676   491    -ALIRDIRRRGKNKVAAQNCRKRKLENIVELEQDLDHLKDEKEKLLK 536  

                   elerLkkevakLksenee<-*
                   e  +  k    Lk+++++   
     ha06676   537 EKGENDKSLHLLKKQLST    554  

//