hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-23352765/chunk_1/iprscan-20080811-23352765.nocrc
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Query sequence: ha06676
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00338                                                  56.6    3.1e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00338    1/1     490   554 ..     1    65 []    56.6  3.1e-12

Alignments of top-scoring domains:
SM00338: domain 1 of 1, from 490 to 554: score 56.6, E = 3.1e-12
                   *->ekdeKrrrRrerNReAArrsReRKkayieeLedkveeLeaENesLrk
                         ++++rRr +N++AA+ +R+RK + i eLe+  ++L+ E+e+L+k
     ha06676   490    LALIRDIRRRGKNKVAAQNCRKRKLENIVELEQDLDHLKDEKEKLLK 536  

                   eleqLrreleklkselee<-*
                   e ++  + l  lk +l++   
     ha06676   537 EKGENDKSLHLLKKQLST    554  

//