hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-23412009/chunk_1/iprscan-20080811-23412009.nocrc
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Query sequence: ha06684
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00275                                                 756.0   9.3e-223   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00275    1/1     117   457 ..     1   400 []   756.0 9.3e-223

Alignments of top-scoring domains:
SM00275: domain 1 of 1, from 117 to 457: score 756.0, E = 9.3e-223
                   *->krrnkeIdkqLekekkkkkkaglSgrevKLLLLGaGESGKSTIlKQM
                       +r+k Id+ L+++ +k        revKLLLLGaGESGKSTI+KQM
     ha06684   117    VERSKMIDRNLREDGEKAA------REVKLLLLGAGESGKSTIVKQM 157  

                   rIlHgdGFseeErleyrplIysNiiqsmraLleAmeelnipledpesenl
                   +I+H+ G+seeE+++y++++ysN+iqs+ a+++Am++l+i+++d+ + + 
     ha06684   158 KIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARAD- 206  

                   neneadadyilsylnikadsseeggseeeplppelaeaikaLWkDpgiqe
                        da+ ++      a ++ee     + ++ ela  ik+LWkD+g+q+
     ha06684   207 -----DARQLFV----LAGAAEE-----GFMTAELAGVIKRLWKDSGVQA 242  

                   cyerrneFqLnDStiyiSEaakYFldnidRIsdpdYvPTeqDILrsRvkT
                   c++r++e+qLnDS       a+Y+l+++dRI++p+Y+PT+qD+Lr+RvkT
     ha06684   243 CFNRSREYQLNDS-------AAYYLNDLDRIAQPNYIPTQQDVLRTRVKT 285  

                   tGIvEtkFevkklkflgVllqfRmfDVGGQRSERkKWIHCFdnSVtAiiF
                   tGIvEt+F++k+l+f       +mfDVGGQRSERkKWIHCF++ VtAiiF
     ha06684   286 TGIVETHFTFKDLHF-------KMFDVGGQRSERKKWIHCFEG-VTAIIF 327  

                   cvaLSEYDQvLeEDettqNRMqESLnLFdsIcNsrwFantTsiILFLNKi
                   cvaLS+YD vL EDe   NRM+ES++LFdsIcN++wF + TsiILFLNK+
     ha06684   328 CVALSDYDLVLAEDEEM-NRMHESMKLFDSICNNKWFTD-TSIILFLNKK 375  

                   DLFeEKikkvpsvplsdyFPdYkGpptppqdqnpdndyeaaakfIkkkFl
                   DLFeEKikk+   pl+++ P+Y G           n+ye+aa++I+ +F+
     ha06684   376 DLFEEKIKKS---PLTICYPEYAGS----------NTYEEAAAYIQCQFE 412  

                   rlnrnsnkrdegnskKsiYpHfTCiATDTenIklVFdaVkDtIlqrNLkd
                   +ln++          K+iY+HfTC ATDT+n+++VFdaV+D+I+++NLkd
     ha06684   413 DLNKRK-------DTKEIYTHFTC-ATDTKNVQFVFDAVTDVIIKNNLKD 454  

                   aGL<-*
                   +GL   
     ha06684   455 CGL    457  

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