hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-16104505/chunk_1/iprscan-20090525-16104505.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha06816 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00122.10.fs E1-E2 ATPase 421.1 2e-127 1 PF00122.10.ls E1-E2 ATPase 423.0 3.8e-124 1 PF00689.11.ls Cation transporting ATPase, C-terminu 301.4 1.5e-87 1 PF00689.11.fs Cation transporting ATPase, C-terminu 299.5 5.7e-87 1 PF00690.16.fs Cation transporter/ATPase, N-terminus 103.1 6.6e-29 1 PF00690.16.ls Cation transporter/ATPase, N-terminus 105.0 2e-28 1 PF00702.16.fs haloacid dehalogenase-like hydrolase 57.4 4.3e-16 3 PF00702.16.ls haloacid dehalogenase-like hydrolase 58.2 2.4e-14 1 PF08282.2.fs haloacid dehalogenase-like hydrolase 15.4 0.0001 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00690.16.fs 1/1 41 119 .. 1 87 [] 103.1 6.6e-29 PF00690.16.ls 1/1 41 119 .. 1 87 [] 105.0 2e-28 PF00122.10.ls 1/1 135 383 .. 1 245 [] 423.0 3.8e-124 PF00122.10.fs 1/1 135 383 .. 1 245 [] 421.1 2e-127 PF00702.16.ls 1/1 387 765 .. 1 183 [] 58.2 2.4e-14 PF00702.16.fs 2/3 613 683 .. 56 112 .. 17.8 9.5e-05 PF00702.16.fs 3/3 736 765 .. 155 183 .] 34.7 1.4e-09 PF08282.2.fs 1/1 743 788 .. 224 271 .] 15.4 0.0001 PF00689.11.ls 1/1 860 1032 .. 1 197 [] 301.4 1.5e-87 PF00689.11.fs 1/1 860 1032 .. 1 197 [] 299.5 5.7e-87 Alignments of top-scoring domains: PF00690.16.fs: domain 1 of 1, from 41 to 119: score 103.1, E = 6.6e-29 *->eelkkevdldahkltvEevleklktdpeeGLsseeaaeRlkkyGpNe e++++ ah+ tvEevl ++++++++GLs e++++ ++ G Ne ha06816 41 EAMEN-----AHTKTVEEVLGHFGVNESTGLSLEQVKKLKERWGSNE 82 LppekktslwlkfLeQFkdplvllLlaAAiiSALdfvlgg<-* Lp+e++++l+++++eQF d+lv++Ll+AA+iS fvl++ ha06816 83 LPAEEGKTLLELVIEQFEDLLVRILLLAACIS---FVLAW 119 PF00690.16.ls: domain 1 of 1, from 41 to 119: score 105.0, E = 2e-28 *->eelkkevdldahkltvEevleklktdpeeGLsseeaaeRlkkyGpNe e++++ ah+ tvEevl ++++++++GLs e++++ ++ G Ne ha06816 41 EAMEN-----AHTKTVEEVLGHFGVNESTGLSLEQVKKLKERWGSNE 82 LppekktslwlkfLeQFkdplvllLlaAAiiSALdfvlgg<-* Lp+e++++l+++++eQF d+lv++Ll+AA+iS fvl++ ha06816 83 LPAEEGKTLLELVIEQFEDLLVRILLLAACIS---FVLAW 119 PF00122.10.ls: domain 1 of 1, from 135 to 383: score 423.0, E = 3.8e-124 *->villivllnatlefyqesrAekAleaLkklvpptAtVlRdG.gkeee villi+++na+++++qe++Ae+A+eaLk++ p++ +V+R+++ + + ha06816 135 VILLILVANAIVGVWQERNAENAIEALKEYEPEMGKVYRQDrKSVQR 181 ipaeeLvpGDiVevkpGdrVPADgrvveges.tLkVDESaLTGESlPVeK i+a+++vpGDiVe+++Gd+VPAD+r+++ +s+tL+VD+S+LTGES+ V K ha06816 182 IKAKDIVPGDIVEIAVGDKVPADIRLTSIKStTLRVDQSILTGESVSVIK 231 hsdvvtp.dnp.lergnmVfaGTlvvsGsltgvVtatGddTflgkIakLV h+d+v+++++++++++nm+f+GT++ G + gvV+atG +T++gkI + + ha06816 232 HTDPVPDpRAVnQDKKNMLFSGTNIAAGKAMGVVVATGVNTEIGKIRDEM 281 eeAqssktPlQrlldkfgkiltpvililavlvfiiwllrnfn.aafggsw +++++tPlQ++ld+fg +l++vi +++++v+ii+++ +fn++++ggsw ha06816 282 VATEQERTPLQQKLDEFGEQLSKVISLICIAVWIINIG-HFNdPVHGGSW 330 legllyalifavallVaAcPegLplvvtvalalGtgrmAkkgaLVKglpA ++g++y++++aval+VaA+PegLp+v+t++lalGt+rmAkk+a+V++lp+ ha06816 331 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 380 vEt<-* vEt ha06816 381 VET 383 PF00122.10.fs: domain 1 of 1, from 135 to 383: score 421.1, E = 2e-127 *->villivllnatlefyqesrAekAleaLkklvpptAtVlRdG.gkeee villi+++na+++++qe++Ae+A+eaLk++ p++ +V+R+++ + + ha06816 135 VILLILVANAIVGVWQERNAENAIEALKEYEPEMGKVYRQDrKSVQR 181 ipaeeLvpGDiVevkpGdrVPADgrvveges.tLkVDESaLTGESlPVeK i+a+++vpGDiVe+++Gd+VPAD+r+++ +s+tL+VD+S+LTGES+ V K ha06816 182 IKAKDIVPGDIVEIAVGDKVPADIRLTSIKStTLRVDQSILTGESVSVIK 231 hsdvvtp.dnp.lergnmVfaGTlvvsGsltgvVtatGddTflgkIakLV h+d+v+++++++++++nm+f+GT++ G + gvV+atG +T++gkI + + ha06816 232 HTDPVPDpRAVnQDKKNMLFSGTNIAAGKAMGVVVATGVNTEIGKIRDEM 281 eeAqssktPlQrlldkfgkiltpvililavlvfiiwllrnfn.aafggsw +++++tPlQ++ld+fg +l++vi +++++v+ii+++ +fn++++ggsw ha06816 282 VATEQERTPLQQKLDEFGEQLSKVISLICIAVWIINIG-HFNdPVHGGSW 330 legllyalifavallVaAcPegLplvvtvalalGtgrmAkkgaLVKglpA ++g++y++++aval+VaA+PegLp+v+t++lalGt+rmAkk+a+V++lp+ ha06816 331 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 380 vEt<-* vEt ha06816 381 VET 383 PF00702.16.ls: domain 1 of 1, from 387 to 765: score 58.2, E = 2.4e-14 *->ikavvFDkDGTLtdgkeppiaeaiveaaaelgl..........lple + +++ Dk+GTLt+ + + +++ + ++++++ + ++ + ha06816 387 TSVICSDKTGTLTTNQ-----MSVCRMFILDRVegdtcslnefTITG 428 evekllgrgl.g...erilleggltaell..................... +++++g+ +++++++ +++ gl++++ +++ + ++ ++ ++ ha06816 429 STYAPIGEVHkDdkpVNCHQYDGLVELATicalcndsaldyneakgvyek 478 .................................................. ++ +++ + ++ + +++ ++ ++ ++ + ++ + +++ + + ha06816 479 vgeatetaltclvekmnvfdtelkglskieranacnsvikqlmkkeftle 528 .................................................. ++++++ + +++++++++ ++ ++ +++ ++ ++ + ++++ + ha06816 529 fsrdrksmsvyctpnkpsrtsmskmfvkgapegvidrcthirvgstkvpm 578 .................................................. +++ + + + ++ ++++++ + +++++ ++++ + +++ + + ha06816 579 tsgvkqkimsvirewgsgsdtlrclalathdnplrreemhledsanfiky 628 ..d.evlglial.dklypgarealkaLkrrGikvailTggdr.naealle +++ ++g++ d+++ +++ +k ++++Gi+v+++Tg++ ++a+a+ + ha06816 629 etNlTFVGCVGMlDPPRIEVASSVKLCRQAGIRVIMITGDNKgTAVAICR 678 .....algla.lfdviidsdevggvgpivvgKPkpeifllalerlgvkpe + + + + ++ + ++ + +p + + a+ ++ + ha06816 679 rigifGQDEDvTSKAFTGREFDE---------LNPSAQRDACLNARCFAR 719 evg...............pe.vlmVGDgvnDapalaaAGvgvamgngg<- +++++++ + ++ +e ++m GDgvnDapal++A +g+amg+g+ ha06816 720 --VepshkskiveflqsfDEiTAMTGDGVNDAPALKKAEIGIAMGSGT 765 * ha06816 - - PF00702.16.fs: domain 2 of 3, from 613 to 683: score 17.8, E = 9.5e-05 *->gltaell...........d.evlglial.dklypgarealkaLkrrG + ++++l+++ + + +++ ++g++ d+++ +++ +k ++++G ha06816 613 RREEMHLedsanfikyetNlTFVGCVGMlDPPRIEVASSVKLCRQAG 659 ikvailTggdr.naeallealgla<-* i+v+++Tg++ ++a+a+ ++ g++ ha06816 660 IRVIMITGDNKgTAVAICRRIGIF 683 PF00702.16.fs: domain 3 of 3, from 736 to 765: score 34.7, E = 1.4e-09 *->pe.vlmVGDgvnDapalaaAGvgvamgngg<-* +e ++m GDgvnDapal++A +g+amg+g+ ha06816 736 DEiTAMTGDGVNDAPALKKAEIGIAMGSGT 765 PF08282.2.fs: domain 1 of 1, from 743 to 788: score 15.4, E = 0.0001 *->GDgeNDieMLelaGlgVAMgNAspevKaaAdyEvtgsNneedGVAka GDg ND + L+ a +g+AMg ++ +K a + v ++ n + a ha06816 743 GDGVNDAPALKKAEIGIAMGSGTAVAKTASEM-VLADDNF-STIVAA 787 l<-* ha06816 788 V 788 PF00689.11.ls: domain 1 of 1, from 860 to 1032: score 301.4, E = 1.5e-87 *->RpPRnpkDeliitgllffrylviGvivavatlaaFvwwfygggenGi +pPRnpk e++i+g+lffryl+iG++v++at++a++wwf++ ha06816 860 KPPRNPK-EPLISGWLFFRYLAIGCYVGAATVGAAAWWFIAA----- 900 dfgPgllygqlthwescsandledsfkgqewCeifrkglefratTmaFtv d+gP+++++ql+h+ +c + +++f ++++C+if+ + ++Tma++v ha06816 901 DGGPRVSFYQLSHFLQCKED--NPDF-EGVDCAIFE---SPYPMTMALSV 944 lVviqmfNAWEalncrsefFmhPldrnSlfqmgplwrNkwLllAvvlsla lV+i+m+N aln++se ++Sl++m+p w+N+wL+++++ls++ ha06816 945 LVTIEMCN---ALNSLSE-------NQSLLRMPP-WENIWLVGSICLSMS 983 lqllivYvPglqtiFqthpllslqeWlvvlpfsflvfildEirKfikRrr l++li+Yv++l+ iFq++pl ++++Wl+vl++s++v++ dE++Kf++R + ha06816 984 LHFLILYVEPLPLIFQITPL-NVTQWLMVLKISLPVILMDETLKFVARNY 1032 <-* ha06816 - - PF00689.11.fs: domain 1 of 1, from 860 to 1032: score 299.5, E = 5.7e-87 *->RpPRnpkDeliitgllffrylviGvivavatlaaFvwwfygggenGi +pPRnpk e++i+g+lffryl+iG++v++at++a++wwf++ ha06816 860 KPPRNPK-EPLISGWLFFRYLAIGCYVGAATVGAAAWWFIAA----- 900 dfgPgllygqlthwescsandledsfkgqewCeifrkglefratTmaFtv d+gP+++++ql+h+ +c + +++f ++++C+if+ + ++Tma++v ha06816 901 DGGPRVSFYQLSHFLQCKED--NPDF-EGVDCAIFE---SPYPMTMALSV 944 lVviqmfNAWEalncrsefFmhPldrnSlfqmgplwrNkwLllAvvlsla lV+i+m+N aln++se ++Sl++m+p w+N+wL+++++ls++ ha06816 945 LVTIEMCN---ALNSLSE-------NQSLLRMPP-WENIWLVGSICLSMS 983 lqllivYvPglqtiFqthpllslqeWlvvlpfsflvfildEirKfikRrr l++li+Yv++l+ iFq++pl ++++Wl+vl++s++v++ dE++Kf++R + ha06816 984 LHFLILYVEPLPLIFQITPL-NVTQWLMVLKISLPVILMDETLKFVARNY 1032 <-* ha06816 - - //