hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-16104505/chunk_1/iprscan-20090525-16104505.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha06816 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01116 ATPase-IIA1_Ca: calcium-translocating 2047.5 0 1 TIGR01494 ATPase_P-type: ATPase, P-type (transpo 436.7 1e-128 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01116 1/1 95 1030 .. 1 800 [] 2047.5 0 TIGR01494 1/6 135 235 .. 1 97 [. 88.0 9.3e-24 TIGR01494 2/6 245 410 .. 92 234 .. 126.1 3.3e-35 TIGR01494 4/6 633 683 .. 316 366 .. 69.7 1.5e-18 TIGR01494 5/6 717 822 .. 366 466 .. 141.3 8.5e-40 Alignments of top-scoring domains: TIGR01116: domain 1 of 1, from 95 to 1030: score 2047.5, E = 0 *->vleQFEDtLVRILLlAAvVSFvL.........vaalVEPfVILLILv v+eQFED+LVRILLlAA++SFvL ++++++++a+VEPfVILLILv ha06816 95 VIEQFEDLLVRILLLAACISFVLawfeegeetITAFVEPFVILLILV 141 lNAiVGVWQErnAEkAIeALKeyesehalVlRdgr......eakDLVPGD +NAiVGVWQErnAE+AIeALKeye+e+++V+R++r++ ++ +akD+VPGD ha06816 142 ANAIVGVWQERNAENAIEALKEYEPEMGKVYRQDRksvqriKAKDIVPGD 191 IVEiaVGdkVPADvRllelk..sLkvDQSiLTGEsvsVnKhtesVpkerA IVEiaVGdkVPAD+Rl+++k+++L+vDQSiLTGEsvsV+Kht++Vp++rA ha06816 192 IVEIAVGDKVPADIRLTSIKstTLRVDQSILTGESVSVIKHTDPVPDPRA 241 vvQdKknMlFsGTlVvaGkArGVVvrTGmnTEIGkIrdevreaeqedTPL v+QdKknMlFsGT+++aGkA+GVVv+TG+nTEIGkIrde++++eqe+TPL ha06816 242 VNQDKKNMLFSGTNIAAGKAMGVVVATGVNTEIGKIRDEMVATEQERTPL 291 kkKLDEFGelLsKvIgyICilVWViNighFn...........AiYYFKiA ++KLDEFGe+LsKvI++ICi+VW+iNighFn++ ++++ ++AiYYFKiA ha06816 292 QQKLDEFGEQLSKVISLICIAVWIINIGHFNdpvhggswirgAIYYFKIA 341 VALAVAAIPEGLPAViTTCLALGtRKMAkkNAiVRkLPSVETLGCTTVIC VALAVAAIPEGLPAViTTCLALGtR+MAkkNAiVR+LPSVETLGCT+VIC ha06816 342 VALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVIC 391 SDKTGTLTTNqMSVaklvaler.........eFkVtGttYdPvggkikd. SDKTGTLTTNqMSV+++++l+r ++++ + +eF++tG+tY+P+g+++kd+ ha06816 392 SDKTGTLTTNQMSVCRMFILDRvegdtcslnEFTITGSTYAPIGEVHKDd 441 ..........LeelAqiaALCNDSkLivdkkk..vekvGeaTEaALkVLv ++ + ++ ++L+elA+i+ALCNDS+L+++++k+ +ekvGeaTE+AL++Lv ha06816 442 kpvnchqydgLVELATICALCNDSALDYNEAKgvYEKVGEATETALTCLV 491 EKiglpaakngkslksrpilgcnslw....kKkATLeFtRdRKSMSVlvk EK++++++++++++k++++++cns++++ kK++TLeF+RdRKSMSV+++ ha06816 492 EKMNVFDTELKGLSKIERANACNSVIkqlmKKEFTLEFSRDRKSMSVYCT 541 ........snkLFvKGAPEevLercThIllkgsaVPLtekmkntiLasik ++++++++++k+FvKGAPE+v++rcThI++++++VP+t+++k++i+++i+ ha06816 542 pnkpsrtsMSKMFVKGAPEGVIDRCTHIRVGSTKVPMTSGVKQKIMSVIR 591 em..sseALRCLAlAfke...................ESkLtfiGvvGll e++++s++LRCLAlA+++++ ++++ + +++ + + E++Ltf+G+vG+l ha06816 592 EWgsGSDTLRCLALATHDnplrreemhledsanfikyETNLTFVGCVGML 641 DPPRpEVadAiekCReAGIrVImITGDnKETAeAicRrIGils....... DPPR+EVa+++++CR+AGIrVImITGDnK+TA+AicRrIGi++++++ ++ ha06816 642 DPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIFGqdedvts 691 .SFTGrEFdemgpkk.......alvFSRvePsHKlrlVe.lqeqgqivAM ++FTGrEFde++p+++++ +a++F+RvePsHK+++Ve lq++++i+AM ha06816 692 kAFTGREFDELNPSAqrdaclnARCFARVEPSHKSKIVEfLQSFDEITAM 741 TGDGVNDAPALKkAdIGIAMGSGTeVAKeASdMVLADDNFATIVkAVeEG TGDGVNDAPALKkA+IGIAMGSGT+VAK+AS+MVLADDNF+TIV+AVeEG ha06816 742 TGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 791 RaIYNNmKqFIRYmISSNIGEVvsIFltsaLGi.eglipvQLLWVNLVTD RaIYNNmKqFIRY+ISSN+GEVv+IFlt+aLG++e+lipvQLLWVNLVTD ha06816 792 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGFpEALIPVQLLWVNLVTD 841 GLPATALgFNpPDkDiMkkpPRredeSPLitgWlFfRYLViGvYVGlATV GLPATALgFNpPD+DiM+kpPR+++e PLi+gWlFfRYL+iG+YVG+ATV ha06816 842 GLPATALGFNPPDLDIMNKPPRNPKE-PLISGWLFFRYLAIGCYVGAATV 890 igfiWw......................................KqkasT ++++Ww +++++ + + ++ + ++++++ ++ + ++++++ T ha06816 891 GAAAWWfiaadggprvsfyqlshflqckednpdfegvdcaifesPYPM-T 939 lSLSVLVviEMfNALNALSEDsSLLripPweNkWLigAIcvSmaLHflIL ++LSVLV+iEM+NALN+LSE++SLLr+pPweN+WL+g+Ic+Sm+LHflIL ha06816 940 MALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLIL 989 YVpllsaiFgvtPLsltdWlmvLkvSlPViLvDEvLKlfSR<-* YV++l++iF++tPL++t+WlmvLk+SlPViL+DE+LK+++R ha06816 990 YVEPLPLIFQITPLNVTQWLMVLKISLPVILMDETLKFVAR 1030 TIGR01494: domain 1 of 6, from 135 to 235: score 88.0, E = 9.3e-24 *->viliivllfvlletlqkeaaedalrslkdkelnpqkvtvlrng...g vil+i++++++++++q+++ae+a+++lk+ +p++ +v+r++++++ ha06816 135 VILLILVANAIVGVWQERNAENAIEALKE--YEPEMGKVYRQDrksV 179 veisskdlvvGDiVlvkkGdivPADgvLLs...gscyVdessLTGEsnpv ++i++kd+v+GDiV+++ Gd+vPAD++L s +++++ Vd+s+LTGEs+ v ha06816 180 QRIKAKDIVPGDIVEIAVGDKVPADIRLTSiksTTLRVDQSILTGESVSV 229 lKtdap<-* +K+ +p ha06816 230 IKHTDP 235 TIGR01494: domain 2 of 6, from 245 to 410: score 126.1, E = 3.3e-35 *->lKtdapfagtynfnGtltlkvskiav..........vvytgfektpl +K+++ f+gt++ G++ ++v++ +v+++ ++ ++++v t +e+tpl ha06816 245 DKKNMLFSGTNIAAGKAMGVVVATGVnteigkirdeMVATEQERTPL 291 qrkldrlafifilfllllalsvflltliglwt..........ffkiflra q+kld+++ + +++ l++++v+++ + +++++ ++++ ++ +++f +a ha06816 292 QQKLDEFGEQLSKVISLICIAVWIINIGHFNDpvhggswirgAIYYFKIA 341 lillviaiPiaLpvavtialavgdkrma...ilvrslnalEelGqvdyic ++l+v+aiP++Lp+++t++la+g++rma+++++vrsl+++E+lG+ ++ic ha06816 342 VALAVAAIPEGLPAVITTCLALGTRRMAkknAIVRSLPSVETLGCTSVIC 391 sDKTGTLTenkmtfkkvyi<-* sDKTGTLT+n+m++ ++ i ha06816 392 SDKTGTLTTNQMSVCRMFI 410 TIGR01494: domain 4 of 6, from 633 to 683: score 69.7, E = 1.5e-18 *->ellGltaieDpLredvketIeeLkraGikvwMlTGDnveTAiaIAke +++G++++ Dp+r +v+ +++++++aGi+v+M+TGDn++TA+aI+++ ha06816 633 TFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRR 679 cglf<-* +g+f ha06816 680 IGIF 683 TIGR01494: domain 5 of 6, from 717 to 822: score 141.3, E = 8.5e-40 *->fARvsPeqKaeiVellqkrgaiVamiGDGaNDapALkaADVGiaig. fARv P++K iVe lq ++i+am+GDG+NDapALk+A +Gia+g+ ha06816 717 FARVEPSHKSKIVEFLQSFDEITAMTGDGVNDAPALKKAEIGIAMGs 763 ....AkaaaDivltddnlslivlllvhGRwtykrikklilyalyynlili ++ Ak a+ +vl+ddn+s+iv ++++GR +y+++k++i y++++n++++ ha06816 764 gtavAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEV 813 illfvlsvi<-* +++f+ +++ ha06816 814 VCIFLTAAL 822 //