hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-16172513/chunk_1/iprscan-20090525-16172513.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ha06904
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00194.11.fs  Eukaryotic-type carbonic anhydrase       175.0    1.8e-49   1
PF00194.11.ls  Eukaryotic-type carbonic anhydrase       174.7    2.2e-49   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00194.11.ls    1/1      41   309 ..     1   283 []   174.7  2.2e-49
PF00194.11.fs    1/1      71   309 ..    33   283 .]   175.0  1.8e-49

Alignments of top-scoring domains:
PF00194.11.ls: domain 1 of 1, from 41 to 309: score 174.7, E = 2.2e-49
                   *->WgYgehngpehhnna.HvlWhklyPiAnGGnCqGeRQSPInIqtkka
                      W Y e    +     + +    l+  A+     G RQSP+nI t+  
     ha06904    41    WAYKEVVQGSF---VpVPSFWGLVNSAWNLCSVGKRQSPVNIETSHM 84   

                   kyDPsLkpLsl.SYdaatakefeivNnGHsvqVefdDsddksvlsGGpLp
                     DP L pL+++++  ++++  ++ N+G+ v   +d       +sGGp +
     ha06904    85 IFDPFLTPLRInTGGRKVSG--TMYNTGRHVSLRLDK-EHLVNISGGPMT 131  

                   aGhpYRLkQfHFHWGGAssddqGSEHTVDGkkYaaELHLVHWNstKYssy
                      + RL + ++H G  s+d qGSEH ++G +++ E  L+H+N   Y ++
     ha06904   132 Y--SHRLEEIRLHFG--SEDSQGSEHLLNGQAFSGEVQLIHYNHELYTNV 177  

                   keAvkkpDGLAVlGvFlkvGdykenpglqkvv..DaLdsIktKGksatft
                    eA+k p+GL V+ +F kv     np l++ +++D    I +K     + 
     ha06904   178 TEAAKSPNGLVVVSIFIKVS-DSSNPFLNRMLnrDTITRITYKNDAYLLQ 226  

                   nFDPsdLLPseklrDYWTYpGSLTTPPLtEsVtWiVlkePIsvSseQllk
                   +++++ L P+     + TY GS T+PP++E   Wi+   P+ + + Q+  
     ha06904   227 GLNIEELYPE--TSSFITYDGSMTIPPCYETASWIIMNKPVYITRMQMHS 274  

                   FRsLlfsaegeeevpGCdGimvdNyRPtQPLkgRvVrASF<-*
                   +R L  +       +     m dN+RP QPL++R +r +    
     ha06904   275 LRLLSQNQPSQIFLS-----MSDNFRPVQPLNNRCIRTNI    309  

PF00194.11.fs: domain 1 of 1, from 71 to 309: score 175.0, E = 1.8e-49
                   *->GeRQSPInIqtkkakyDPsLkpLsl.SYdaatakefeivNnGHsvqV
                      G RQSP+nI t+    DP L pL+++++  ++++  ++ N+G+ v  
     ha06904    71    GKRQSPVNIETSHMIFDPFLTPLRInTGGRKVSG--TMYNTGRHVSL 115  

                   efdDsddksvlsGGpLpaGhpYRLkQfHFHWGGAssddqGSEHTVDGkkY
                    +d       +sGGp +   + RL + ++H G  s+d qGSEH ++G ++
     ha06904   116 RLDK-EHLVNISGGPMTY--SHRLEEIRLHFG--SEDSQGSEHLLNGQAF 160  

                   aaELHLVHWNstKYssykeAvkkpDGLAVlGvFlkvGdykenpglqkvv.
                   + E  L+H+N   Y ++ eA+k p+GL V+ +F kv     np l++ ++
     ha06904   161 SGEVQLIHYNHELYTNVTEAAKSPNGLVVVSIFIKVS-DSSNPFLNRMLn 209  

                   .DaLdsIktKGksatftnFDPsdLLPseklrDYWTYpGSLTTPPLtEsVt
                   +D    I +K     + +++++ L P+     + TY GS T+PP++E   
     ha06904   210 rDTITRITYKNDAYLLQGLNIEELYPE--TSSFITYDGSMTIPPCYETAS 257  

                   WiVlkePIsvSseQllkFRsLlfsaegeeevpGCdGimvdNyRPtQPLkg
                   Wi+   P+ + + Q+  +R L  +       +     m dN+RP QPL++
     ha06904   258 WIIMNKPVYITRMQMHSLRLLSQNQPSQIFLS-----MSDNFRPVQPLNN 302  

                   RvVrASF<-*
                   R +r +    
     ha06904   303 RCIRTNI    309  

//