hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-16240874/chunk_1/iprscan-20090525-16240874.nocrc
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Query sequence: ha06911
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00180.10.fs Isocitrate/isopropylmalate dehydrogenase       571.7     2e-172   1
PF00180.10.ls Isocitrate/isopropylmalate dehydrogenase       573.5   1.9e-169   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00180.10.fs   1/1      37   362 ..     1   397 []   571.7   2e-172
PF00180.10.ls   1/1      37   362 ..     1   397 []   573.5 1.9e-169

Alignments of top-scoring domains:
PF00180.10.fs: domain 1 of 1, from 37 to 362: score 571.7, E = 2e-172
                   *->kIavLpGDGIGPEvmeaalkVLkavgekapgelefefeeglvGgaai
                      +++++pGDGIGPE+++a++k+++a++  ap    +++ee++v +++ 
     ha06911    37    TVTLIPGDGIGPEISAAVMKIFDAAK--AP----IQWEERNVTAIQG 77   

                   DetGiepLPeETleackeaCdavLlGAvgGPkgWDtltpaevRPengGLL
                    +   +++P E+ e+++++ ++ L+G++++P++      a++ ++n  LL
     ha06911    78 PGGK-WMIPSEAKESMDKN-KMGLKGPLKTPIA------AGHPSMN--LL 117  

                   aLRKeldLfANLRPvkvyspslgdaSPlKreiveggvDiviVRELTGGiY
                    LRK++dL+AN+RP++++   +g+++P+ +      v+iv +RE+T+G+Y
     ha06911   118 -LRKTFDLYANVRPCVSI---EGYKTPYTD------VNIVTIRENTEGEY 157  

                   fGipkgikgaklkliffleeElefesgnfgeevAvdtklYsreEieRIar
                   +Gi+++i +                 g     v++++kl+++ +++RIa+
     ha06911   158 SGIEHVIVD-----------------G-----VVQSIKLITEGASKRIAE 185  

                   vAfelArkrnPrkkVtSvDKaNVLksSrGAFKlWRetveevakkskkskf
                   +Afe+Ar+++ r +Vt v+KaN++++S+G   l+ + + eva+       
     ha06911   186 FAFEYARNNH-RSNVTAVHKANIMRMSDG---LFLQKCREVAE------- 224  

                   eYPdveLeHmlvDnaamqLvknPkqFDyViVTeNlFGDILSDeASmltGS
                    ++d+++++m+ D +++++v++P+qFD V+V++Nl+GDILSD++++l+G+
     ha06911   225 SCKDIKFNEMYLDTVCLNMVQDPSQFD-VLVMPNLYGDILSDLCAGLIGG 273  

                   LGmLPSASLgaepDgsgfglyEPvHGSAPDIAGKgkANPiAtILSaAMML
                   LG++PS ++ga    +g++++E vHG+APDIAGK++ANP+A++LSa+MML
     ha06911   274 LGVTPSGNIGA----NGVAIFESVHGTAPDIAGKDMANPTALLLSAVMML 319  

                   rySlgleeeAdaiEaAVlkvLeeGGirTgDLggeadGakyvsTsemgeav
                   r+ +gl+++A++iEaA+ +++++G+++T+DLgg+a      ++s+++e++
     ha06911   320 RH-MGLFDHAARIEAACFATIKDGKSLTKDLGGNA------KCSDFTEEI 362  

                   <-*
                      
     ha06911     -     -    

PF00180.10.ls: domain 1 of 1, from 37 to 362: score 573.5, E = 1.9e-169
                   *->kIavLpGDGIGPEvmeaalkVLkavgekapgelefefeeglvGgaai
                      +++++pGDGIGPE+++a++k+++a++  ap    +++ee++v +++ 
     ha06911    37    TVTLIPGDGIGPEISAAVMKIFDAAK--AP----IQWEERNVTAIQG 77   

                   DetGiepLPeETleackeaCdavLlGAvgGPkgWDtltpaevRPengGLL
                    +   +++P E+ e+++++ ++ L+G++++P++      a++ ++n  LL
     ha06911    78 PGGK-WMIPSEAKESMDKN-KMGLKGPLKTPIA------AGHPSMN--LL 117  

                   aLRKeldLfANLRPvkvyspslgdaSPlKreiveggvDiviVRELTGGiY
                    LRK++dL+AN+RP++++   +g+++P+ +      v+iv +RE+T+G+Y
     ha06911   118 -LRKTFDLYANVRPCVSI---EGYKTPYTD------VNIVTIRENTEGEY 157  

                   fGipkgikgaklkliffleeElefesgnfgeevAvdtklYsreEieRIar
                   +Gi+++i +                 g     v++++kl+++ +++RIa+
     ha06911   158 SGIEHVIVD-----------------G-----VVQSIKLITEGASKRIAE 185  

                   vAfelArkrnPrkkVtSvDKaNVLksSrGAFKlWRetveevakkskkskf
                   +Afe+Ar+++ r +Vt v+KaN++++S+G   l+ + + eva+       
     ha06911   186 FAFEYARNNH-RSNVTAVHKANIMRMSDG---LFLQKCREVAE------- 224  

                   eYPdveLeHmlvDnaamqLvknPkqFDyViVTeNlFGDILSDeASmltGS
                    ++d+++++m+ D +++++v++P+qFD V+V++Nl+GDILSD++++l+G+
     ha06911   225 SCKDIKFNEMYLDTVCLNMVQDPSQFD-VLVMPNLYGDILSDLCAGLIGG 273  

                   LGmLPSASLgaepDgsgfglyEPvHGSAPDIAGKgkANPiAtILSaAMML
                   LG++PS ++ga    +g++++E vHG+APDIAGK++ANP+A++LSa+MML
     ha06911   274 LGVTPSGNIGA----NGVAIFESVHGTAPDIAGKDMANPTALLLSAVMML 319  

                   rySlgleeeAdaiEaAVlkvLeeGGirTgDLggeadGakyvsTsemgeav
                   r+ +gl+++A++iEaA+ +++++G+++T+DLgg+a      ++s+++e++
     ha06911   320 RH-MGLFDHAARIEAACFATIKDGKSLTKDLGGNA------KCSDFTEEI 362  

                   <-*
                      
     ha06911     -     -    

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