hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-14355772/chunk_1/iprscan-20090618-14355772.nocrc
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Query sequence: hc00370
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01208.8.ls Uroporphyrinogen decarboxylase (URO-D)         715.5   3.5e-212   1
PF01208.8.fs Uroporphyrinogen decarboxylase (URO-D)         713.6   1.3e-211   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01208.8.fs   1/1      16   362 ..     1   358 []   713.6 1.3e-211
PF01208.8.ls   1/1      16   362 ..     1   358 []   715.5 3.5e-212

Alignments of top-scoring domains:
PF01208.8.fs: domain 1 of 1, from 16 to 362: score 713.6, E = 1.3e-211
                   *->tkndrlLRAlrGepVdrvPVWlMRQAGRYlPEYrelRekaadFleac
                      +knd++LRA++Ge++d++PVW+MRQAGRYlPE+re+R+ a+dF+++c
     hc00370    16    LKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRA-AQDFFSTC 61   

                   rnPELaaEitlQPlrryglDAaIlFSDIlvplealGidldivegdkGPvi
                   r PE ++E+tlQPlrr++lDAaI+FSDIlv+++alG+++++v+g kGP++
     hc00370    62 RSPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPG-KGPSF 110  

                   pePirtpaDveklkdldplkesrlpyVleAIkiLReelggevPlIGFaGA
                   peP+r++ D+e+l+d++  ++s+l+yV++AI+++R++l g+vPlIGFaGA
     hc00370   111 PEPLREEQDLERLRDPEV-VASELGYVFQAITLTRQRLAGRVPLIGFAGA 159  

                   PfTLAsYmiEGgsSknftktKafmyaePealhaLLdklTdvviaYlkaQv
                   P+TL++Ym+EGg+S +++++K+++y++P+a+h+LL +lTd+ ++Yl +Qv
     hc00370   160 PWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQV 209  

                   eAGAqavqiFDSWASgglLSgeDYreFaLPyqrrivdrv.kelkkagvp.
                    AGAqa+q+F+S+A  g+L+++ + +FaLPy+r++++ v+++l +ag+++
     hc00370   210 VAGAQALQLFESHA--GHLGPQLFNKFALPYIRDVAKQVkARLREAGLAp 257  

                   vPvIhFakGsgqlLermaestGaDvvSvDWtvdideArrrvgkgvallQG
                   vP+I+Fak+++++Le++a++ G++vv++DWtv +++Ar+ vgk+v+ lQG
     hc00370   258 VPMIIFAKDGHFALEELAQA-GYEVVGLDWTVAPKKARECVGKTVT-LQG 305  

                   NLDPsvLlasgevieektktvvdkfgnavvagkgrhIfNLGHGilPdTpp
                   NLDP++L+as+e+i +++k+++d+fg      + r+I+NLGHG++Pd++p
     hc00370   306 NLDPCALYASEEEIGQLVKQMLDDFG------PHRYIANLGHGLYPDMDP 349  

                   enlkalveavhel<-*
                   e+++a+v+avh++   
     hc00370   350 EHVGAFVDAVHKH    362  

PF01208.8.ls: domain 1 of 1, from 16 to 362: score 715.5, E = 3.5e-212
                   *->tkndrlLRAlrGepVdrvPVWlMRQAGRYlPEYrelRekaadFleac
                      +knd++LRA++Ge++d++PVW+MRQAGRYlPE+re+R+ a+dF+++c
     hc00370    16    LKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRA-AQDFFSTC 61   

                   rnPELaaEitlQPlrryglDAaIlFSDIlvplealGidldivegdkGPvi
                   r PE ++E+tlQPlrr++lDAaI+FSDIlv+++alG+++++v+g kGP++
     hc00370    62 RSPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPG-KGPSF 110  

                   pePirtpaDveklkdldplkesrlpyVleAIkiLReelggevPlIGFaGA
                   peP+r++ D+e+l+d++  ++s+l+yV++AI+++R++l g+vPlIGFaGA
     hc00370   111 PEPLREEQDLERLRDPEV-VASELGYVFQAITLTRQRLAGRVPLIGFAGA 159  

                   PfTLAsYmiEGgsSknftktKafmyaePealhaLLdklTdvviaYlkaQv
                   P+TL++Ym+EGg+S +++++K+++y++P+a+h+LL +lTd+ ++Yl +Qv
     hc00370   160 PWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQV 209  

                   eAGAqavqiFDSWASgglLSgeDYreFaLPyqrrivdrv.kelkkagvp.
                    AGAqa+q+F+S+A  g+L+++ + +FaLPy+r++++ v+++l +ag+++
     hc00370   210 VAGAQALQLFESHA--GHLGPQLFNKFALPYIRDVAKQVkARLREAGLAp 257  

                   vPvIhFakGsgqlLermaestGaDvvSvDWtvdideArrrvgkgvallQG
                   vP+I+Fak+++++Le++a++ G++vv++DWtv +++Ar+ vgk+v+ lQG
     hc00370   258 VPMIIFAKDGHFALEELAQA-GYEVVGLDWTVAPKKARECVGKTVT-LQG 305  

                   NLDPsvLlasgevieektktvvdkfgnavvagkgrhIfNLGHGilPdTpp
                   NLDP++L+as+e+i +++k+++d+fg      + r+I+NLGHG++Pd++p
     hc00370   306 NLDPCALYASEEEIGQLVKQMLDDFG------PHRYIANLGHGLYPDMDP 349  

                   enlkalveavhel<-*
                   e+++a+v+avh++   
     hc00370   350 EHVGAFVDAVHKH    362  

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