hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-14355772/chunk_1/iprscan-20090618-14355772.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hc00370
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR01464 hemE: uroporphyrinogen decarboxylase           744.5   2.2e-221   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR01464   1/1      20   361 ..     1   351 []   744.5 2.2e-221

Alignments of top-scoring domains:
TIGR01464: domain 1 of 1, from 20 to 361: score 744.5, E = 2.2e-221
                   *->lfLrAakGevvdrpPVWfMRQAGRYLPEYrelRakagdFlelCrnpD
                      +fLrAa+Ge++d++PVW+MRQAGRYLPE+re+Ra + dF+++Cr+p+
     hc00370    20    TFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPE 65   

                   lAvEVTLQPirrfgvDAAIlFSDILvppqAlGldveFveGkGPvisnpir
                    ++E TLQP+rrf++DAAI+FSDILv+pqAlG++v +v+GkGP +++p+r
     hc00370    66 ACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLR 115  

                   taeDverLke.fdpeselsyVyeaIkllreeLdgvevPLIGFAGAPWTLA
                   +++D+erL+++++++sel yV++aI+l+r++L+g +vPLIGFAGAPWTL+
     hc00370   116 EEQDLERLRDpEVVASELGYVFQAITLTRQRLAG-RVPLIGFAGAPWTLM 164  

                   sYMIEGGgSkdfakaKkfmyeePealhaLLnkLtdatieYLseQVkAGAq
                   +YM+EGGgS+++a+aK+++y++P+a+h+LL++Ltda++ YL++QV+AGAq
     hc00370   165 TYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQ 214  

                   AVQiFDSWaGaLspedFeeFvlpylakIieevkkrlpEfvlenvPvIlFa
                   A+Q+F+S+aG+L p++F++F+lpy+++++++vk+rl+E++l++vP+I+Fa
     hc00370   215 ALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFA 264  

                   kGaghlleelaetgpaDvvglDWsvdlkearkrvgdgKPvaiQGNLDPav
                   k+++++leela++g ++vvglDW+v +k+ar++vg++  v++QGNLDP+ 
     hc00370   265 KDGHFALEELAQAG-YEVVGLDWTVAPKKARECVGKT--VTLQGNLDPCA 311  

                   LyapeealeekveriLeafgqeAGgksgyIFNLGHGilPetPpEnVkaLv
                   Lya+ee++ + v+++L++fg     +++yI+NLGHG++P+++pE+V+a+v
     hc00370   312 LYASEEEIGQLVKQMLDDFG-----PHRYIANLGHGLYPDMDPEHVGAFV 356  

                   eyVhs<-*
                   ++Vh+   
     hc00370   357 DAVHK    361  

//