# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohc00438.fasta.nr -Q hc00438.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hc00438, 401 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6840164 sequences Expectation_n fit: rho(ln(x))= 4.9849+/-0.000181; mu= 11.4731+/- 0.010 mean_var=68.3237+/-13.182, 0's: 37 Z-trim: 57 B-trim: 0 in 0/67 Lambda= 0.155163 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087698|dbj|BAD92296.1| actin related protein ( 401) 2743 622.9 3.4e-176 gi|73958091|ref|XP_536873.2| PREDICTED: similar to ( 434) 2702 613.7 2.1e-173 gi|88984001|sp|Q92747|ARC1A_HUMAN Actin-related pr ( 370) 2527 574.5 1.1e-161 gi|118600958|sp|Q1JP79|ARC1A_BOVIN Actin-related p ( 370) 2522 573.4 2.5e-161 gi|90074930|dbj|BAE87145.1| unnamed protein produc ( 370) 2520 573.0 3.4e-161 gi|59797636|sp|Q99PD4|ARC1A_RAT Actin-related prot ( 370) 2517 572.3 5.4e-161 gi|59797974|sp|Q9R0Q6|ARC1A_MOUSE Actin-related pr ( 370) 2513 571.4 1e-160 gi|1654002|emb|CAA70203.1| Sop2p-like protein [Hom ( 370) 2502 568.9 5.5e-160 gi|62897591|dbj|BAD96735.1| actin related protein ( 365) 2486 565.3 6.6e-159 gi|119597087|gb|EAW76681.1| actin related protein ( 369) 2470 561.8 7.9e-158 gi|126334484|ref|XP_001363635.1| PREDICTED: hypoth ( 370) 2458 559.1 5.1e-157 gi|149409092|ref|XP_001511775.1| PREDICTED: hypoth ( 370) 2444 555.9 4.5e-156 gi|53133554|emb|CAG32106.1| hypothetical protein [ ( 370) 2441 555.3 7.1e-156 gi|28856198|gb|AAH48036.1| Actin related protein 2 ( 370) 2330 530.4 2.2e-148 gi|89272099|emb|CAJ81752.1| actin related protein ( 370) 2321 528.4 8.7e-148 gi|27371277|gb|AAH41267.1| Arpc1a protein [Xenopus ( 370) 2315 527.1 2.2e-147 gi|47207365|emb|CAG14263.1| unnamed protein produc ( 370) 2315 527.1 2.2e-147 gi|194386110|dbj|BAG59619.1| unnamed protein produ ( 345) 2066 471.3 1.3e-130 gi|53136430|emb|CAG32544.1| hypothetical protein [ ( 369) 1884 430.6 2.4e-118 gi|149409090|ref|XP_001511730.1| PREDICTED: hypoth ( 368) 1871 427.7 1.8e-117 gi|31419515|gb|AAH53229.1| Actin related protein 2 ( 369) 1856 424.3 1.9e-116 gi|119352605|gb|ABL63905.1| actin-related protein ( 369) 1853 423.6 3e-116 gi|27924440|gb|AAH45043.1| Arx-3and3n122-prov prot ( 369) 1849 422.7 5.6e-116 gi|57087613|ref|XP_536872.1| PREDICTED: similar to ( 372) 1849 422.8 5.6e-116 gi|3121763|sp|O15143.3|ARC1B_HUMAN Actin-related p ( 372) 1848 422.5 6.5e-116 gi|114614897|ref|XP_519230.2| PREDICTED: actin rel ( 562) 1849 422.9 7.7e-116 gi|12832138|dbj|BAB21980.1| unnamed protein produc ( 372) 1846 422.1 8.9e-116 gi|49115501|gb|AAH73411.1| MGC80877 protein [Xenop ( 369) 1844 421.6 1.2e-115 gi|74218055|dbj|BAE42010.1| unnamed protein produc ( 372) 1843 421.4 1.4e-115 gi|74140559|dbj|BAE42412.1| unnamed protein produc ( 372) 1842 421.2 1.7e-115 gi|74152462|dbj|BAE33961.1| unnamed protein produc ( 372) 1841 421.0 1.9e-115 gi|12229626|sp|O88656.3|ARC1B_RAT Actin-related pr ( 372) 1839 420.5 2.6e-115 gi|12229677|sp|Q9WV32.3|ARC1B_MOUSE Actin-related ( 372) 1839 420.5 2.6e-115 gi|110282936|sp|Q58CQ2.4|ARC1B_BOVIN Actin-related ( 372) 1832 418.9 7.8e-115 gi|16307455|gb|AAH10275.1| Arpc1b protein [Mus mus ( 376) 1832 418.9 7.9e-115 gi|17943201|pdb|1K8K|C Chain C, Crystal Structure ( 372) 1831 418.7 9.1e-115 gi|95767485|gb|ABF57300.1| actin related protein 2 ( 370) 1825 417.4 2.3e-114 gi|110331787|gb|ABG66999.1| actin related protein ( 371) 1825 417.4 2.3e-114 gi|61555662|gb|AAX46742.1| actin related protein 2 ( 372) 1825 417.4 2.3e-114 gi|49903464|gb|AAH76887.1| Actin related protein 2 ( 369) 1823 416.9 3.1e-114 gi|51772073|ref|XP_486686.1| PREDICTED: hypothetic ( 372) 1822 416.7 3.7e-114 gi|194218680|ref|XP_001494740.2| PREDICTED: simila ( 373) 1813 414.7 1.5e-113 gi|194218678|ref|XP_001494759.2| PREDICTED: simila ( 381) 1813 414.7 1.5e-113 gi|161611693|gb|AAI55745.1| Zgc:86896 [Danio rerio ( 357) 1755 401.7 1.2e-109 gi|47938050|gb|AAH71519.1| Zgc:86896 [Danio rerio] ( 357) 1746 399.7 4.7e-109 gi|89026256|ref|XP_941344.1| PREDICTED: similar to ( 370) 1740 398.3 1.2e-108 gi|109066079|ref|XP_001111652.1| PREDICTED: actin ( 364) 1721 394.1 2.3e-107 gi|38174437|gb|AAH61418.1| Hypothetical protein MG ( 275) 1697 388.6 7.8e-106 gi|73957945|ref|XP_860885.1| PREDICTED: similar to ( 330) 1682 385.3 9.2e-105 gi|47207366|emb|CAG14264.1| unnamed protein produc ( 379) 1671 382.9 5.6e-104 >>gi|62087698|dbj|BAD92296.1| actin related protein 2/3 (401 aa) initn: 2743 init1: 2743 opt: 2743 Z-score: 3318.5 bits: 622.9 E(): 3.4e-176 Smith-Waterman score: 2743; 100.000% identity (100.000% similar) in 401 aa overlap (1-401:1-401) 10 20 30 40 50 60 hc0043 ASTAQSPRILRSEPVRTPPIPAFSPLKTLRIMSLHQFLLEPITCHAWNRDRTQIALSPNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ASTAQSPRILRSEPVRTPPIPAFSPLKTLRIMSLHQFLLEPITCHAWNRDRTQIALSPNN 10 20 30 40 50 60 70 80 90 100 110 120 hc0043 HEVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HEVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPT 70 80 90 100 110 120 130 140 150 160 170 180 hc0043 LVILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LVILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLD 130 140 150 160 170 180 190 200 210 220 230 240 hc0043 WHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 WHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHG 190 200 210 220 230 240 250 260 270 280 290 300 hc0043 VSFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VSFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCP 250 260 270 280 290 300 310 320 330 340 350 360 hc0043 MLFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 MLFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQ 310 320 330 340 350 360 370 380 390 400 hc0043 VSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQCLRIM ::::::::::::::::::::::::::::::::::::::::: gi|620 VSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQCLRIM 370 380 390 400 >>gi|73958091|ref|XP_536873.2| PREDICTED: similar to act (434 aa) initn: 2702 init1: 2702 opt: 2702 Z-score: 3268.4 bits: 613.7 E(): 2.1e-173 Smith-Waterman score: 2702; 99.002% identity (99.002% similar) in 401 aa overlap (1-401:34-434) 10 20 30 hc0043 ASTAQSPRILRSEPVRTPPIPAFSPLKTLR ::: ::::::::::::: ::::: :::::: gi|739 MQSWRRGHFRDLSAAPSGPRSSARARRSLFASTDQSPRILRSEPVRTAPIPAFYPLKTLR 10 20 30 40 50 60 40 50 60 70 80 90 hc0043 IMSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 IMSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGID 70 80 90 100 110 120 100 110 120 130 140 150 hc0043 WAPKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 WAPKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARL 130 140 150 160 170 180 160 170 180 190 200 210 hc0043 ISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 ISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEK 190 200 210 220 230 240 220 230 240 250 260 270 hc0043 PASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 PASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQV 250 260 270 280 290 300 280 290 300 310 320 330 hc0043 STLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDIPKQSIQRNMSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 STLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDIPKQSIQRNMSA 310 320 330 340 350 360 340 350 360 370 380 390 hc0043 MERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKT 370 380 390 400 410 420 400 hc0043 LESSIQCLRIM :::::: :::: gi|739 LESSIQGLRIM 430 >>gi|88984001|sp|Q92747|ARC1A_HUMAN Actin-related protei (370 aa) initn: 2527 init1: 2527 opt: 2527 Z-score: 3057.6 bits: 574.5 E(): 1.1e-161 Smith-Waterman score: 2527; 99.730% identity (99.730% similar) in 370 aa overlap (32-401:1-370) 10 20 30 40 50 60 hc0043 STAQSPRILRSEPVRTPPIPAFSPLKTLRIMSLHQFLLEPITCHAWNRDRTQIALSPNNH :::::::::::::::::::::::::::::: gi|889 MSLHQFLLEPITCHAWNRDRTQIALSPNNH 10 20 30 70 80 90 100 110 120 hc0043 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|889 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL 40 50 60 70 80 90 130 140 150 160 170 180 hc0043 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|889 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW 100 110 120 130 140 150 190 200 210 220 230 240 hc0043 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|889 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV 160 170 180 190 200 210 250 260 270 280 290 300 hc0043 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|889 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM 220 230 240 250 260 270 310 320 330 340 350 360 hc0043 LFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|889 LFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV 280 290 300 310 320 330 370 380 390 400 hc0043 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQCLRIM ::::::::::::::::::::::::::::::::::: :::: gi|889 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM 340 350 360 370 >>gi|118600958|sp|Q1JP79|ARC1A_BOVIN Actin-related prote (370 aa) initn: 2522 init1: 2522 opt: 2522 Z-score: 3051.6 bits: 573.4 E(): 2.5e-161 Smith-Waterman score: 2522; 99.459% identity (99.730% similar) in 370 aa overlap (32-401:1-370) 10 20 30 40 50 60 hc0043 STAQSPRILRSEPVRTPPIPAFSPLKTLRIMSLHQFLLEPITCHAWNRDRTQIALSPNNH :::::::::::::::::::::::::::::: gi|118 MSLHQFLLEPITCHAWNRDRTQIALSPNNH 10 20 30 70 80 90 100 110 120 hc0043 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 EVHIYKKNGGQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL 40 50 60 70 80 90 130 140 150 160 170 180 hc0043 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW 100 110 120 130 140 150 190 200 210 220 230 240 hc0043 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV 160 170 180 190 200 210 250 260 270 280 290 300 hc0043 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM 220 230 240 250 260 270 310 320 330 340 350 360 hc0043 LFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 LFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV 280 290 300 310 320 330 370 380 390 400 hc0043 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQCLRIM ::::::::::::::::::::::::::::::::::: :::: gi|118 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM 340 350 360 370 >>gi|90074930|dbj|BAE87145.1| unnamed protein product [M (370 aa) initn: 2520 init1: 2520 opt: 2520 Z-score: 3049.2 bits: 573.0 E(): 3.4e-161 Smith-Waterman score: 2520; 99.459% identity (99.730% similar) in 370 aa overlap (32-401:1-370) 10 20 30 40 50 60 hc0043 STAQSPRILRSEPVRTPPIPAFSPLKTLRIMSLHQFLLEPITCHAWNRDRTQIALSPNNH :::::::::::::::::::::::::::::: gi|900 MSLHQFLLEPITCHAWNRDRTQIALSPNNH 10 20 30 70 80 90 100 110 120 hc0043 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL 40 50 60 70 80 90 130 140 150 160 170 180 hc0043 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW 100 110 120 130 140 150 190 200 210 220 230 240 hc0043 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV 160 170 180 190 200 210 250 260 270 280 290 300 hc0043 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM 220 230 240 250 260 270 310 320 330 340 350 360 hc0043 LFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|900 LFNYDDRGCLTFVSKLDIPKQSIQHNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV 280 290 300 310 320 330 370 380 390 400 hc0043 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQCLRIM ::::::::::::::::::::::::::::::::::: :::: gi|900 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM 340 350 360 370 >>gi|59797636|sp|Q99PD4|ARC1A_RAT Actin-related protein (370 aa) initn: 2517 init1: 2517 opt: 2517 Z-score: 3045.5 bits: 572.3 E(): 5.4e-161 Smith-Waterman score: 2517; 98.649% identity (99.730% similar) in 370 aa overlap (32-401:1-370) 10 20 30 40 50 60 hc0043 STAQSPRILRSEPVRTPPIPAFSPLKTLRIMSLHQFLLEPITCHAWNRDRTQIALSPNNH :::::::::::::::::::::::::::::: gi|597 MSLHQFLLEPITCHAWNRDRTQIALSPNNH 10 20 30 70 80 90 100 110 120 hc0043 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL ::::::::::::.:::::::::::::::::::::::::::::::::::::::::.::::: gi|597 EVHIYKKNGSQWTKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGIWKPTL 40 50 60 70 80 90 130 140 150 160 170 180 hc0043 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW 100 110 120 130 140 150 190 200 210 220 230 240 hc0043 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV 160 170 180 190 200 210 250 260 270 280 290 300 hc0043 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|597 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLRTEFLPLLSVSFVSENSVVAAGHDCCPM 220 230 240 250 260 270 310 320 330 340 350 360 hc0043 LFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|597 LFNYDDRGCLTFVSKLDVPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV 280 290 300 310 320 330 370 380 390 400 hc0043 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQCLRIM ::::::::::::::::::::::::::::::::::: :::: gi|597 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM 340 350 360 370 >>gi|59797974|sp|Q9R0Q6|ARC1A_MOUSE Actin-related protei (370 aa) initn: 2513 init1: 2513 opt: 2513 Z-score: 3040.7 bits: 571.4 E(): 1e-160 Smith-Waterman score: 2513; 98.378% identity (99.730% similar) in 370 aa overlap (32-401:1-370) 10 20 30 40 50 60 hc0043 STAQSPRILRSEPVRTPPIPAFSPLKTLRIMSLHQFLLEPITCHAWNRDRTQIALSPNNH :::::::::::::::::::::::::::::: gi|597 MSLHQFLLEPITCHAWNRDRTQIALSPNNH 10 20 30 70 80 90 100 110 120 hc0043 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL ::::::::::::.:::::::::::::::::::::::::::::::::::::::::.::::: gi|597 EVHIYKKNGSQWTKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGIWKPTL 40 50 60 70 80 90 130 140 150 160 170 180 hc0043 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW 100 110 120 130 140 150 190 200 210 220 230 240 hc0043 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|597 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV 160 170 180 190 200 210 250 260 270 280 290 300 hc0043 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM ::::::.:::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|597 SFSASGNRLAWVSHDSTVSVADASKSVQVSTLRTEFLPLLSVSFVSENSVVAAGHDCCPM 220 230 240 250 260 270 310 320 330 340 350 360 hc0043 LFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|597 LFNYDDRGCLTFVSKLDVPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV 280 290 300 310 320 330 370 380 390 400 hc0043 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQCLRIM ::::::::::::::::::::::::::::::::::: :::: gi|597 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM 340 350 360 370 >>gi|1654002|emb|CAA70203.1| Sop2p-like protein [Homo sa (370 aa) initn: 2502 init1: 2502 opt: 2502 Z-score: 3027.4 bits: 568.9 E(): 5.5e-160 Smith-Waterman score: 2502; 98.919% identity (99.189% similar) in 370 aa overlap (32-401:1-370) 10 20 30 40 50 60 hc0043 STAQSPRILRSEPVRTPPIPAFSPLKTLRIMSLHQFLLEPITCHAWNRDRTQIALSPNNH :::::::::::::::::::::::::::::: gi|165 MSLHQFLLEPITCHAWNRDRTQIALSPNNH 10 20 30 70 80 90 100 110 120 hc0043 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|165 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL 40 50 60 70 80 90 130 140 150 160 170 180 hc0043 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|165 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFEAENDWWVSKHIKKPIRSTVLSLDW 100 110 120 130 140 150 190 200 210 220 230 240 hc0043 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: gi|165 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKKASTPWGSKMPFGQLMSEFGGSGTGGWVHGV 160 170 180 190 200 210 250 260 270 280 290 300 hc0043 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|165 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM 220 230 240 250 260 270 310 320 330 340 350 360 hc0043 LFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|165 LFIYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV 280 290 300 310 320 330 370 380 390 400 hc0043 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQCLRIM ::::::::::::::::::::::::::::::::::: :::: gi|165 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM 340 350 360 370 >>gi|62897591|dbj|BAD96735.1| actin related protein 2/3 (365 aa) initn: 2486 init1: 2486 opt: 2486 Z-score: 3008.1 bits: 565.3 E(): 6.6e-159 Smith-Waterman score: 2486; 99.452% identity (99.726% similar) in 365 aa overlap (37-401:1-365) 10 20 30 40 50 60 hc0043 PRILRSEPVRTPPIPAFSPLKTLRIMSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIY :::::::::::::::::::::::::::::: gi|628 FLLEPITCHAWNRDRTQIALSPNNHEVHIY 10 20 30 70 80 90 100 110 120 hc0043 KKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 KKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRI 40 50 60 70 80 90 130 140 150 160 170 180 hc0043 NRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 NRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNV 100 110 120 130 140 150 190 200 210 220 230 240 hc0043 LLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 LLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSAS 160 170 180 190 200 210 250 260 270 280 290 300 hc0043 GSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 GSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYD 220 230 240 250 260 270 310 320 330 340 350 360 hc0043 DRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEV :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 DHGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEV 280 290 300 310 320 330 370 380 390 400 hc0043 DKQDCRKFCTTGIDGAMTIWDFKTLESSIQCLRIM :::::::::::::::::::::::::::::: :::: gi|628 DKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM 340 350 360 >>gi|119597087|gb|EAW76681.1| actin related protein 2/3 (369 aa) initn: 2513 init1: 2470 opt: 2470 Z-score: 2988.7 bits: 561.8 E(): 7.9e-158 Smith-Waterman score: 2470; 98.895% identity (99.724% similar) in 362 aa overlap (32-393:1-362) 10 20 30 40 50 60 hc0043 STAQSPRILRSEPVRTPPIPAFSPLKTLRIMSLHQFLLEPITCHAWNRDRTQIALSPNNH :::::::::::::::::::::::::::::: gi|119 MSLHQFLLEPITCHAWNRDRTQIALSPNNH 10 20 30 70 80 90 100 110 120 hc0043 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTL 40 50 60 70 80 90 130 140 150 160 170 180 hc0043 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDW 100 110 120 130 140 150 190 200 210 220 230 240 hc0043 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV 160 170 180 190 200 210 250 260 270 280 290 300 hc0043 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPM 220 230 240 250 260 270 310 320 330 340 350 360 hc0043 LFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQV 280 290 300 310 320 330 370 380 390 400 hc0043 SIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQCLRIM ::::::::::::::::::::::::::::.. . gi|119 SIYEVDKQDCRKFCTTGIDGAMTIWDFKVFSTLPSRASG 340 350 360 401 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 23:56:51 2008 done: Mon Aug 11 23:59:18 2008 Total Scan time: 816.050 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]