hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-23591935/chunk_1/iprscan-20080811-23591935.nocrc
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Query sequence: hc00438
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                        80.6    4.7e-21   6
PF00400.22.fs WD domain, G-beta repeat                        71.5    3.5e-19   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/4      73   111 ..     1    38 []    33.9  1.4e-08
PF00400.22.ls   1/6      73   111 ..     1    38 []    35.9  1.3e-07
PF00400.22.fs   2/4     163   201 ..     1    38 []    23.1  1.5e-05
PF00400.22.ls   3/6     163   201 ..     1    38 []    25.1  0.00023

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 4, from 73 to 111: score 33.9, E = 1.4e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +   ++l+ H++ +t ++++p  + +++++++D++ ++W+   
     hc00438    73    WVKAhELkEHNGHITGIDWAPK-SDRIVTCGADRNAYVWS    111  

PF00400.22.ls: domain 1 of 6, from 73 to 111: score 35.9, E = 1.3e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +   ++l+ H++ +t ++++p  + +++++++D++ ++W+   
     hc00438    73    WVKAhELkEHNGHITGIDWAPK-SDRIVTCGADRNAYVWS    111  

PF00400.22.fs: domain 2 of 4, from 163 to 201: score 23.1, E = 1.5e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  k++ +   stV +++++p+   lla gS+D ++++++   
     hc00438   163    WVSKhIKkPIRSTVLSLDWHPN-NVLLAAGSCDFKCRVFS    201  

PF00400.22.ls: domain 3 of 6, from 163 to 201: score 25.1, E = 0.00023
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  k++ +   stV +++++p+   lla gS+D ++++++   
     hc00438   163    WVSKhIKkPIRSTVLSLDWHPN-NVLLAAGSCDFKCRVFS    201  

//