hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-23591935/chunk_1/iprscan-20080811-23591935.nocrc
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Query sequence: hc00438
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  84.4    1.4e-20   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/6      72   111 ..     1    46 []    35.4  7.9e-06
SM00320    2/6     116   155 ..     1    46 []     3.0  1.6e+02
SM00320    3/6     165   201 ..     1    46 []    20.4     0.25
SM00320    4/6     222   263 ..     1    46 []    16.6      1.1
SM00320    5/6     266   304 ..     1    46 []     3.3  1.5e+02
SM00320    6/6     343   387 ..     1    46 []     5.6       63

Alignments of top-scoring domains:
SM00320: domain 1 of 6, from 72 to 111: score 35.4, E = 7.9e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   ++lk H+g   +t++++ p +      +++++++ D++ ++W
     hc00438    72    QwVKAHELKEHNG--HITGIDWAPKS------DRIVTCGaDRNAYVW 110  

                   d<-*
                   +   
     hc00438   111 S    111  

SM00320: domain 2 of 6, from 116 to 155: score 3.0, E = 1.6e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k++ ++   +   + t v++sp        n +a+gs+ + i + 
     hc00438   116    VwKPTLVILRINR--AATFVKWSPLE------NKFAVGSgARLISVC 154  

                   d<-*
                       
     hc00438   155 Y    155  

SM00320: domain 3 of 6, from 165 to 201: score 20.4, E = 0.25
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   + ++   +   V+s++++p++       lla+gs D ++r++
     hc00438   165    SkHIKKPIR---S--TVLSLDWHPNN------VLLAAGScDFKCRVF 200  

                   d<-*
                   +   
     hc00438   201 S    201  

SM00320: domain 4 of 6, from 222 to 263: score 16.6, E = 1.1
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                       ++l +++ ++g  g  +V++v+fs +g      ++la  s+D+t+ 
     hc00438   222    FgQLMSEFGgsGTGG--WVHGVSFSASG------SRLAWVShDSTVS 260  

                   lWd<-*
                   + d   
     hc00438   261 VAD    263  

SM00320: domain 5 of 6, from 266 to 304: score 3.3, E = 1.5e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ +++tlk      p +sv+f +        n ++++++D++  l+
     hc00438   266    KsVQVSTLKTEFL--PLLSVSFVSE-------NSVVAAGhDCCPMLF 303  

                   d<-*
                   +   
     hc00438   304 N    304  

SM00320: domain 6 of 6, from 343 to 387: score 5.6, E = 63
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      t      l++ H++  ++t v++   ++   + + +++ + Dg   +
     hc00438   343    TeDRNTALEtLHQN--SITQVSIYEVDKQ--DCRKFCTTGiDGAMTI 385  

                   Wd<-*
                   Wd   
     hc00438   386 WD    387  

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