hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-00050891/chunk_1/iprscan-20080812-00050891.nocrc
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Query sequence: hc00467
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00069.15.fs Protein kinase domain                          126.2    9.5e-36   3
PF00069.15.ls Protein kinase domain                          122.9    8.6e-34   1
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     32.1      3e-08   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     17.9     0.0029   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00069.15.ls   1/1      26   307 ..     1   287 []   122.9  8.6e-34
PF00069.15.fs   2/3      77   241 ..    46   209 ..    91.9  5.5e-26
PF00069.15.fs   3/3     280   307 ..   260   287 .]    25.3  4.7e-07
PF00076.12.ls   1/1     348   404 ..     1    74 []    17.9   0.0029
PF00076.12.fs   1/1     348   404 ..    13    74 .]    32.1    3e-08

Alignments of top-scoring domains:
PF00069.15.ls: domain 1 of 1, from 26 to 307: score 122.9, E = 8.6e-34
                   *->yelleklGsGsfGtVykakhkgtgk..iVAvKiikkrkek....skk
                      +++ ++lGsGs+++Vy+ +  g++ ++  A+K++  +++ +   s  
     hc00467    26    WQVQSRLGSGSSASVYRVRCCGNPGspPGALKQFLPPGTTgaaaSAA 72   

                   dktarrlsEiqilkrL.sHpNIvrlidvfed.....kdhlylVlEycegG
                   ++  r+  E + l  L++H NIv+l++vf+ + +++ ++ +l lE+++  
     hc00467    73 EYGFRK--ERAALEQLqGHRNIVTLYGVFTIhfspnVPSRCLLLELLDVS 120  

                   L.rvldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRD
                   ++ +l  +       ++ +   s++ ++++a+ +l++l++LH +g +H D
     hc00467   121 VsELLLYS-------SHQGC--SMWMIQHCARDVLEALAFLHHEGYVHAD 161  

                   LKPeNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPE
                   LKP NIL + ++++   +K++DFGl+ k  ++++   +    T +Y+APE
     hc00467   162 LKPRNILWSAENEC---FKLIDFGLSFK--EgNQDvKYIQ--TDGYRAPE 204  

                   v..........llggngygtkvDvWSlGvilyelltGkpPFsgev.q.ds
                    + ++   + +l+++++ +++vD WSlG+il e+++G    ++ v++++ 
     hc00467   205 AelqnclaqagLQSDTECTSAVDLWSLGIILLEMFSG-MKLKHTVrSqEW 253  

                   .ldqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLn
                   +++  ++i+ i   +   +   +                 ++dLik++L+
     hc00467   254 kANSSAIIDHIFASKAVVNAAIP--------------AYHLRDLIKSMLH 289  

                   kDPskRltaeeilqHPwf<-*
                    DPs+R+ ae +l++P+f   
     hc00467   290 DDPSRRIPAEMALCSPFF    307  

PF00069.15.fs: domain 2 of 3, from 77 to 241: score 91.9, E = 5.5e-26
                   *->rrlsEiqilkrL.sHpNIvrlidvfed.....kdhlylVlEycegGL
                      r+  E + l  L++H NIv+l++vf+ + +++ ++ +l lE+++  +
     hc00467    77    RK--ERAALEQLqGHRNIVTLYGVFTIhfspnVPSRCLLLELLDVSV 121  

                   .rvldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDL
                   + +l  +       ++ +   s++ ++++a+ +l++l++LH +g +H DL
     hc00467   122 sELLLYS-------SHQGC--SMWMIQHCARDVLEALAFLHHEGYVHADL 162  

                   KPeNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEv
                   KP NIL + ++++   +K++DFGl+ k  ++++   +    T +Y+APE 
     hc00467   163 KPRNILWSAENEC---FKLIDFGLSFK--EgNQDvKYIQ--TDGYRAPEA 205  

                   ..........llggngygtkvDvWSlGvilyelltG<-*
                   + ++   + +l+++++ +++vD WSlG+il e+++G   
     hc00467   206 elqnclaqagLQSDTECTSAVDLWSLGIILLEMFSG    241  

PF00069.15.fs: domain 3 of 3, from 280 to 307: score 25.3, E = 4.7e-07
                   *->akdLikkcLnkDPskRltaeeilqHPwf<-*
                      ++dLik++L+ DPs+R+ ae +l++P+f   
     hc00467   280    LRDLIKSMLHDDPSRRIPAEMALCSPFF    307  

PF00076.12.ls: domain 1 of 1, from 348 to 404: score 17.9, E = 0.0029
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                                  ed+k+  +k+Gp++s  +++      +  +G  FV
     hc00467   348    ------------EDVKEECQKYGPVVSLLVPKE-----NPGRGQVFV 377  

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+++  d ++A + l G++++g+ +     
     hc00467   378 EYANAGDSKAAQKLLTGRMFDGKFVVA    404  

PF00076.12.fs: domain 1 of 1, from 348 to 404: score 32.1, E = 3e-08
                   *->edLkdlFskfGpiesikivrDttretgrskGfaFVeFedeedAekAl
                      ed+k+  +k+Gp++s  +++      +  +G  FVe+++  d ++A 
     hc00467   348    EDVKEECQKYGPVVSLLVPKE-----NPGRGQVFVEYANAGDSKAAQ 389  

                   dalnGkelggrelrv<-*
                   + l G++++g+ +     
     hc00467   390 KLLTGRMFDGKFVVA    404  

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