hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-00050891/chunk_1/iprscan-20080812-00050891.nocrc
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Query sequence: hc00467
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 133.3    2.5e-35   1
SM00219                                                 -78.4    2.8e-06   1
SM00360                                                  33.7    2.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      26   307 ..     1   280 []   -78.4  2.8e-06
SM00220    1/1      26   307 ..     1   231 []   133.3  2.5e-35
SM00360    1/1     323   405 ..     1   121 []    33.7  2.5e-05

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 26 to 307: score -78.4, E = 2.8e-06
                   *->ltlgkkLGeGaFGeVykGtlk.....ieVAVKtLkeda.........
                       +    LG+G    Vy+ +  +++++ + A K   +  +++   +  
     hc00467    26    WQVQSRLGSGSSASVYRVRCCgnpgsPPGALKQFLPPGttgaaasaa 72   

                   keeFlrEakiMkklGgkHpNiVkLlGvcteegrrF.mevePlmivmEyme
                   +  F++E   + +l   H NiV L+Gv t +   F+  v+  ++++E+ +
     hc00467    73 EYGFRKERAALEQL-QGHRNIVTLYGVFTIH---FsPNVPSRCLLLELLD 118  

                   gGdLldyLrknrpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNc
                     +  + L ++ +++ s+    + A ++ +  ++L++ ++vH DL  RN+
     hc00467   119 V-SVSELLLYSSHQgCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNI 167  

                   Lvgenk.vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWm
                   L ++++++ K  DFGLs + ++        d++  ++ +g +        
     hc00467   168 LWSAENeCFKLIDFGLSFKEGNQ-------DVKYIQT-DGYR-------- 201  

                   APEsl...........kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiq
                   APE+  ++   + + + d ++ts+ D WS G+ L E+f+  +  +    q
     hc00467   202 APEAElqnclaqaglqSDTECTSAVDLWSLGIILLEMFSGMKLKHTVRSQ 251  

                   q.fmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPe
                   + + + + ++ ++ + +     +             l dl+++  + dP+
     hc00467   252 EwKANSSAIIDHIFASKAVVNAAI--------PAYHLRDLIKSMLHDDPS 293  

                   dR..PtFselverl<-*
                    R +  ++ +  ++   
     hc00467   294 RRipAEMALCSPFF    307  

SM00220: domain 1 of 1, from 26 to 307: score 133.3, E = 2.5e-35
                   *->YellkklGkGaFGkVylardkk..tgrlvAiKvik............
                      +++   lG+G+ ++Vy++r  +++     A+K+  ++++++   +  
     hc00467    26    WQVQSRLGSGSSASVYRVRCCGnpGSPPGALKQFLppgttgaaasaa 72   

                   .erilrEikiLkk..dHPNIVkLydvfed......dklylVmEyceGdlG
                   +  +++E++ L++ ++H NIV+Ly+vf  + +++  + +l +E+++ ++ 
     hc00467    73 eYGFRKERAALEQlqGHRNIVTLYGVFTIhfspnvPSRCLLLELLDVSVS 122  

                   dLfdllkkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPe
                   +L+ +  ++g+       s  ++++ +r +l+aL++LH  g +H DLKP 
     hc00467   123 ELLLYSSHQGC-------SMwMIQHCARDVLEALAFLHHEGYVHADLKPR 165  

                   NiLLds...hvKlaDFGlArql....ttfvGTpeYmAPEvl.........
                   NiL + ++++ Kl+DFGl+ + ++++  ++ T  Y+APE   ++   + +
     hc00467   166 NILWSAeneCFKLIDFGLSFKEgnqdVKYIQTDGYRAPEAElqnclaqag 215  

                   .....gYgkpavDiWSlGcilyElltGkpPFp.........qldlifkki
                    ++++  +  avD WSlG+il E+++G  + ++ ++++ + +  +i+++i
     hc00467   216 lqsdtECTS-AVDLWSLGIILLEMFSGMKLKHtvrsqewkaNSSAIIDHI 264  

                   g...........SpeakdLikklLvkdPekRlta.eaLedeldikaHPff
                     ++   +   +   ++dLik +L+ dP++R+ a+ aL         Pff
     hc00467   265 FaskavvnaaipAYHLRDLIKSMLHDDPSRRIPAeMALC-------SPFF 307  

                   <-*
                      
     hc00467     -     -    

SM00360: domain 1 of 1, from 323 to 405: score 33.7, E = 2.5e-05
                   *->tlfVgNLn...dppdvteedLrelF.kevksvevfraeteskfGkvv
                      t   + Ln  +d++  +ee+ +++ ++++++        ++k+G+vv
     hc00467   323    TPVLRLLNvldDDYLENEEEYEDVVeDVKEE--------CQKYGPVV 361  

                   svrivrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAek
                   s  ++++                           +G  FVe++++ d ++
     hc00467   362 SLLVPKENP------------------------GRGQVFVEYANAGDSKA 387  

                   AlliealnaskGkeledgGrptlglrVe<-*
                   A  +++l    G+++  +G+    +      
     hc00467   388 A--QKLLT---GRMF--DGKF---VVAT    405  

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