hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-00162251/chunk_1/iprscan-20080812-00162251.nocrc
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Query sequence: hf00566
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03184.9.fs DDE superfamily endonuclease                   318.4    2.7e-97   1
PF03184.9.ls DDE superfamily endonuclease                   320.1    3.5e-93   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03184.9.fs   1/1      22   226 ..     1   242 []   318.4  2.7e-97
PF03184.9.ls   1/1      22   226 ..     1   242 []   320.1  3.5e-93

Alignments of top-scoring domains:
PF03184.9.fs: domain 1 of 1, from 22 to 226: score 318.4, E = 2.7e-97
                   *->ippediFNaDETGlfwgllpngtVvgsseregrrvpgkkrgekrrlT
                      ++ e+++NaDETGlfw +lpn t      +eg +vpg k+g k+rlT
     hf00566    22    LSAEQVYNADETGLFWRCLPNPT------PEGGAVPGPKQG-KDRLT 61   

                   vvicaNaaGgeKLpPlvIgKgknprsfkfYflaekkikslpveYkankna
                   v++caNa+G+++L+Pl IgK+  pr+fk+       i++lpv Yka++na
     hf00566    62 VLMCANATGSHRLKPLAIGKCSGPRAFKG-------IQHLPVAYKAQGNA 104  

                   WmTseifeeWLekvFdprmk.leylrpktegrkvLLlLDghgsHprtdef
                   W+++eif++W++++F+p+++++++++++ e+ k++LlLD++++Hp++ e+
     hf00566   105 WVDKEIFSDWFHHIFVPSVReHFRTIGLPEDSKAVLLLDSSRAHPQEAEL 154  

                   iRmatcelnNIillfLPahsssllQPlDqGVisslKraYRrkllkkalag
                          + N++++fLPa+++sl+QP++qG+        Rr +++++++ 
     hf00566   155 ------VSSNVFTIFLPASVASLVQPMEQGI--------RRDFMRNFINP 190  

                   ieslskeqkkskltnpqktlnlldAlewiakAWnkavkketIvsgw<-*
                      l++         p+ ++n++dA++ +a+AWn av+++ ++++w   
     hf00566   191 PVPLQG---------PHARYNMNDAIFSVACAWN-AVPSHVFRRAW    226  

PF03184.9.ls: domain 1 of 1, from 22 to 226: score 320.1, E = 3.5e-93
                   *->ippediFNaDETGlfwgllpngtVvgsseregrrvpgkkrgekrrlT
                      ++ e+++NaDETGlfw +lpn t      +eg +vpg k+g k+rlT
     hf00566    22    LSAEQVYNADETGLFWRCLPNPT------PEGGAVPGPKQG-KDRLT 61   

                   vvicaNaaGgeKLpPlvIgKgknprsfkfYflaekkikslpveYkankna
                   v++caNa+G+++L+Pl IgK+  pr+fk+       i++lpv Yka++na
     hf00566    62 VLMCANATGSHRLKPLAIGKCSGPRAFKG-------IQHLPVAYKAQGNA 104  

                   WmTseifeeWLekvFdprmk.leylrpktegrkvLLlLDghgsHprtdef
                   W+++eif++W++++F+p+++++++++++ e+ k++LlLD++++Hp++ e+
     hf00566   105 WVDKEIFSDWFHHIFVPSVReHFRTIGLPEDSKAVLLLDSSRAHPQEAEL 154  

                   iRmatcelnNIillfLPahsssllQPlDqGVisslKraYRrkllkkalag
                          + N++++fLPa+++sl+QP++qG+        Rr +++++++ 
     hf00566   155 ------VSSNVFTIFLPASVASLVQPMEQGI--------RRDFMRNFINP 190  

                   ieslskeqkkskltnpqktlnlldAlewiakAWnkavkketIvsgw<-*
                      l++         p+ ++n++dA++ +a+AWn av+++ ++++w   
     hf00566   191 PVPLQG---------PHARYNMNDAIFSVACAWN-AVPSHVFRRAW    226  

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