hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-00233260/chunk_1/iprscan-20080812-00233260.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hf00569y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00242 1395.4 0 1 SM00015 152.5 4.3e-41 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00242 1/1 80 779 .. 1 771 [] 1395.4 0 SM00015 1/6 780 802 .. 1 23 [] 22.2 0.074 SM00015 2/6 803 825 .. 1 23 [] 23.0 0.041 SM00015 3/6 828 850 .. 1 23 [] 21.9 0.091 SM00015 4/6 851 873 .. 1 23 [] 21.6 0.11 SM00015 5/6 876 898 .. 1 23 [] 36.3 4.2e-06 SM00015 6/6 899 921 .. 1 23 [] 27.6 0.0018 Alignments of top-scoring domains: SM00242: domain 1 of 1, from 80 to 779: score 1395.4, E = 0 *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdl.IYTYiGlvLva rnp++++g +D++ L+yL+EpavlhNLk+R+l+ +IYTY+G+vLva hf00569y2 80 RNPDILVGENDLTALSYLHEPAVLHNLKVRFLESNhIYTYCGIVLVA 126 vNPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlr +NPY ql piY+++vi +Y+ G+++g++ PH+FA+A+eAY++M r hf00569y2 127 INPYEQL-PIYGQDVIYAYS------GQNMGDMDPHIFAVAEEAYKQMAR 169 ekeNQsIiISGESGAGKTEatKkimqYLAavsg..svesvedqiLesNPi + +NQsIi+SGESGAGKT+++K++m+Y+A v+g+ s + +e+++L+s Pi hf00569y2 170 DEKNQSIIVSGESGAGKTVSAKYAMRYFATVGGsaSETNIEEKVLASSPI 219 LEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQ +EA GNAKT+RN+NSSRFGK+i+I Fd+ +i+GA++++YLLEKSRVV+Q hf00569y2 220 MEAIGNAKTTRNDNSSRFGKYIQIGFDKRYHIIGANMRTYLLEKSRVVFQ 269 akgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfank a++ERNYHIFYQL+a a ++ kel L+ s+ed++Y++qgg hf00569y2 270 ADDERNYHIFYQLCAAAGLPEFKELALT----SAEDFFYTSQGG------ 309 ryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAIL +++g+DDae+F++ t++A++ lG e++q+sIF+i+A+IL hf00569y2 310 -----DTSIEGVDDAEDFEK----TRQAFTLLGVKESHQMSIFKIIASIL 350 HLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtk HLG + ++++r+ ++++++s + + l++ ++LLgv+ +++e++L++ hf00569y2 351 HLGSVAIQAERD--GDSCSIS---PQDVYLSNFCRLLGVEHSQMEHWLCH 395 RkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl. Rk++t+ e +++k+++++q+++aR+ALAK+iY+ LF+W+V+ INk+l+ hf00569y2 396 RKLVTTSE---TYVKTMSLQQVINARNALAKHIYAQLFGWIVEHINKALh 442 ....sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQ ++ ++ +fIGVLDIyGFE Fe+NSFEQfCINyaNEKLQQ+Fn hvFKlEQ hf00569y2 443 tslkQHSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNSHVFKLEQ 492 EEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClfHAq EEY++E+I+Wt IdF+ DNQpciDLIE+K lGIl+lLDEeC++ hf00569y2 493 EEYMKEQIPWTLIDFY--DNQPCIDLIEAK----LGILDLLDEECKV--- 533 PkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFii PkgTDq++++KL+ + h++++hf+kp r+++taFii hf00569y2 534 PKGTDQNWAQKLYDR-----HSSSQHFQKP-----------RMSNTAFII 567 kHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqss H+A +V+Y +GFLeKN+Dt++e+ i++l++Sk+pl+a+LF ++ d hf00569y2 568 VHFADKVEYLSDGFLEKNRDTVYEEQINILKASKFPLVADLFHDDKDPVP 617 saakekssggagksrkagr.r.epskgtisskkrppTvGsqFk.sLneLm +++++k+s ++++r+a++++++ + k +++TvG qF++sL Lm hf00569y2 618 ATTPGKGSSSKISVRSARPpMkVSN------KEHKKTVGHQFRtSLHLLM 661 etLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGF etLn+t+PH++RCIKPN+eK+p++Fd+++ +QLr++GvLE+iRI+ aG+ hf00569y2 662 ETLNATTPHYVRCIKPNDEKLPFHFDPKRAVQQLRACGVLETIRISAAGY 711 PyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqslglg P+R+ +++F++RY+vL++k + + d+k++c+ +L+ l+ hf00569y2 712 PSRWAYHDFFNRYRVLVKKRELANT---------DKKAICRSVLENLI-- 750 iegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-* +d++++q+G+TK+F+R +gq+a+LE+lR hf00569y2 751 -----KDPDKFQFGRTKIFFR-AGQVAYLEKLRAD 779 SM00015: domain 1 of 6, from 780 to 802: score 22.2, E = 0.074 *->rleraAiiIQaawRGylaRkryk<-* + + a i+IQ+++RG+l+ +y+ hf00569y2 780 KFRTATIMIQKTVRGWLQKVKYH 802 SM00015: domain 2 of 6, from 803 to 825: score 23.0, E = 0.041 *->rleraAiiIQaawRGylaRkryk<-* rl+ a + +Q+++RG+laR+ hf00569y2 803 RLKGATLTLQRYCRGHLARRLAE 825 SM00015: domain 3 of 6, from 828 to 850: score 21.9, E = 0.091 *->rleraAiiIQaawRGylaRkryk<-* r+ raA+++Q+++R+ +aR+ y+ hf00569y2 828 RRIRAAVVLQKHYRMQRARQAYQ 850 SM00015: domain 4 of 6, from 851 to 873: score 21.6, E = 0.11 *->rleraAiiIQaawRGylaRkryk<-* r++raA++IQa+ R +R+ y+ hf00569y2 851 RVRRAAVVIQAFTRAMFVRRTYR 873 SM00015: domain 5 of 6, from 876 to 898: score 36.3, E = 4.2e-06 *->rleraAiiIQaawRGylaRkryk<-* +e+ A+ IQ+++RG++aR++++ hf00569y2 876 LMEHKATTIQKHVRGWMARRHFQ 898 SM00015: domain 6 of 6, from 899 to 921: score 27.6, E = 0.0018 *->rleraAiiIQaawRGylaRkryk<-* rl+ aAi+IQ a+R+ +aR++ k hf00569y2 899 RLRDAAIVIQCAFRMLKARRELK 921 //