hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-00364601/chunk_1/iprscan-20080812-00364601.nocrc
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Query sequence: hf00991
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                1342.4          0   1
SM00015                                                  29.0    0.00064   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1      90   826 ..     1   771 []  1342.4        0
SM00015    1/1     827   849 ..     1    23 []    29.0  0.00064

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 90 to 826: score 1342.4, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                      +nppkf +VeDm++Lt+LnE++vlhNLk RY+++lIYTY+Gl++v++
     hf00991    90    MNPPKFSKVEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVI 136  

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                   NPYk+l piY++ +i++Yr      Gk+r+E+pPH++Ai+++AYr+Ml++
     hf00991   137 NPYKNL-PIYSENIIEMYR------GKKRHEMPPHIYAISESAYRCMLQD 179  

                   keNQsIiISGESGAGKTEatKkimqYLAavsg..................
                   +e+QsI+++GESGAGKTE+tKk++qYLA+v+++++++++++ +++++++ 
     hf00991   180 REDQSILCTGESGAGKTENTKKVIQYLAHVASshkgrkdhnipqespkpv 229  

                   .svesvedqiLesNPiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivG
                   +  + +e q+L++NPiLE+FGNAKTv+N+NSSRFGKfi+I+Fd +G ivG
     hf00991   230 kHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 279  

                   AkIenYLLEKSRVVsQakgERNYHIFYQLLaGaseelkkelgLskFSksp
                   A+Ie+YLLEKSR V+Qak+ER +HIFYQLL+Ga e lk+ l+L+    + 
     hf00991   280 ANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLE----GF 325  

                   edYkYLnqggtpfankryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGf
                    +Y++L++g             + ++g  D+++F+eT+E    Am+++Gf
     hf00991   326 NNYRFLSNG------------YIPIPGQQDKDNFQETME----AMHIMGF 359  

                   seeEqesIFrilAAILHLGNieFeegrntgdnaavtslkvadeeelqkaA
                   s+eE+ s++++++++L  GNi+F+++rn   ++a+     +  +++qk++
     hf00991   360 SHEEILSMLKVVSSVLQFGNISFKKERN--TDQAS----MPENTVAQKLC 403  

                   eLLgvdpeeLekaLtkRkiktggeggsvitkplnveqAvyaRDALAKaiY
                   +LLg ++ e+ +a+++++ik+g++   ++ k++++eqA +a+ ALAKa Y
     hf00991   404 HLLGMNVMEFTRAILTPRIKVGRD---YVQKAQTKEQADFAVEALAKATY 450  

                   sRLFdWLVkrINksl......sayfIGVLDIyGFEiFekNSFEQfCINya
                   +RLF WLV+rINk+l++++++ a+fIG+LDI+GFEiFe NSFEQ+CINy+
     hf00991   451 ERLFRWLVHRINKALdrtkrqGASFIGILDIAGFEIFELNSFEQLCINYT 500  

                   NEKLQQfFnqhvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkr
                   NEKLQQ+Fn+ +F lEQEEY+rEGIeW fIdF+l D+QpciDLIE ++ +
     hf00991   501 NEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGL-DLQPCIDLIERPA-N 548  

                   PlGIlslLDEeClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkS
                   P+G+l+lLDEeC+f   Pk+TD+tF+eKL      q  ++h++f+kpr  
     hf00991   549 PPGVLALLDEECWF---PKATDKTFVEKL-----VQEQGSHSKFQKPRQ- 589  

                   lkkgkpkkrfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsS
                            +++++F i HYAG+V+Y ++ +L KN+D+L++++  Ll++S
     hf00991   590 --------LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQS 631  

                   knpliasLFpeeadqsssaakekssggagksrkagrreps.k........
                   +++++a+L+++e  +                       ++ +  ++ ++ 
     hf00991   632 SDRFVAELWKDEIQNI----------------------QRaSfydsvsgl 659  

                   ............................gtisskkrppTvGsqFk.sLne
                   ++++ ++  + ++ ++ +++  ++  +++    k++++TvG+++k+sL +
     hf00991   660 heppvdrivgldqvtgmtetafgsayktK----KGMFRTVGQLYKeSLTK 705  

                   LmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRra
                   Lm+tL++tnP+F+RCI+PN+eK++g+ d++lVl+QLr++GvLE+iRI+r 
     hf00991   706 LMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQ 755  

                   GFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqslg
                   GFP+R+ f+eF+qRY+ +l ++  p+g       f+d k+ace ++ +l+
     hf00991   756 GFPNRIVFQEFRQRYE-ILTPNAIPKG-------FMDGKQACERMIRALE 797  

                   lgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                          ld++ y+iG +K+F+R +g+la+LEe+R+    
     hf00991   798 -------LDPNLYRIGQSKIFFR-AGVLAHLEEERDL    826  

SM00015: domain 1 of 1, from 827 to 849: score 29.0, E = 0.00064
                   *->rleraAiiIQaawRGylaRkryk<-*
                      +++ ++i++Qa +RGylaRk +    
     hf00991   827    KITDIIIFFQAVCRGYLARKAFA    849  

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