hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-00433199/chunk_1/iprscan-20080812-00433199.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hg00295 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 449.5 1.6e-130 9 SM00408 429.9 1.3e-124 9 SM00220 328.5 4.6e-94 1 SM00219 7.6 1.3e-11 1 SM00060 52.8 4.5e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/9 146 231 .. 1 58 [] 48.0 1.3e-09 SM00408 1/9 152 220 .. 1 56 [] 56.0 4.7e-12 SM00409 2/9 274 358 .. 1 58 [] 54.6 1.3e-11 SM00408 2/9 280 347 .. 1 56 [] 47.7 1.6e-09 SM00409 3/9 527 612 .. 1 58 [] 59.7 3.8e-13 SM00408 3/9 533 601 .. 1 56 [] 52.3 6.4e-11 SM00409 4/9 627 708 .. 1 58 [] 57.2 2.1e-12 SM00408 4/9 633 697 .. 1 56 [] 74.6 1.3e-17 SM00409 5/9 736 820 .. 1 58 [] 53.2 3.4e-11 SM00408 5/9 742 809 .. 1 56 [] 43.7 2.4e-08 SM00409 6/9 834 919 .. 1 58 [] 37.2 2.3e-06 SM00408 6/9 840 908 .. 1 56 [] 29.8 0.00038 SM00409 7/9 1211 1295 .. 1 58 [] 49.0 6.2e-10 SM00408 7/9 1217 1284 .. 1 56 [] 50.0 3e-10 SM00409 8/9 1351 1435 .. 1 58 [] 40.8 1.8e-07 SM00408 8/9 1357 1424 .. 1 56 [] 10.3 0.47 SM00060 1/1 1438 1520 .. 1 69 [] 52.8 4.5e-11 SM00219 1/1 1571 1826 .. 1 280 [] 7.6 1.3e-11 SM00220 1/1 1571 1826 .. 1 231 [] 328.5 4.6e-94 SM00409 9/9 1921 2006 .. 1 58 [] 49.8 3.5e-10 SM00408 9/9 1927 1995 .. 1 56 [] 65.5 6.5e-15 Alignments of top-scoring domains: SM00409: domain 1 of 9, from 146 to 231: score 48.0, E = 1.3e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ keG +++++ ++ + + +++tW++++++ +++++ + + hg00295 146 PRnLCIKEGATAKFEGrVRgypepQVTWHrngqpitsggrflldcgi 192 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ +L+I+ v +eD G YtC+at++sg + +++LtV+ hg00295 193 rgtfsLVIhAVHEEDR---GKYTCEATngSGARQV--TVELTVE 231 SM00408: domain 1 of 9, from 152 to 220: score 56.0, E = 4.7e-12 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL +eG ++ ++ +++g+p+p++tW ++g+p+ ++++ + + ++ +L hg00295 152 KEGATAKFEGRVRGYPEPQVTWHRnGQPITsggrflldcgirGTFSL 198 tiknvsleDsGlYtCvArNsvg<-* i v +eD+G+YtC+A+N g hg00295 199 VIHAVHEEDRGKYTCEATNGSG 220 SM00409: domain 2 of 9, from 274 to 358: score 54.6, E = 1.3e-11 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++v+vkeG+ +++C++++ + +++tW++++ + +++ + + + ++ hg00295 274 LGrVVVKEGQMGRFSCkITgrpqpQVTWLkgnvplqpsarvsvsekn 320 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + + L+I++v +D G+YtC + ++sg+as+ +++L+++ hg00295 321 gmqvLEIhGVNQDDV---GVYTCLVVngSGKASM--SAELSIQ 358 SM00408: domain 2 of 9, from 280 to 347: score 47.7, E = 1.6e-09 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +eGq ++ C+ +g+p p++tWlk++ pl+++ + + +++++ + L+ hg00295 280 KEGQMGRFSCKITGRPQPQVTWLKgNVPLQpsarvsvseknGMQVLE 326 iknvsleDsGlYtCvArNsvg<-* i v +D G+YtC++ N g hg00295 327 IHGVNQDDVGVYTCLVVNGSG 347 SM00409: domain 3 of 9, from 527 to 612: score 59.7, E = 3.8e-13 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++++vke ++v+++C++s+ +++++ W+ +++ +++ ++ + hg00295 527 PQsQEVKENQTVKFRCeVSgipkpEVAWFlegtpvrrqegsievyed 573 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ L + +++ Ds GtY C+a++ g++s+ + tL+V+ hg00295 574 agshyLCLlKARTRDS---GTYSCTASnaQGQVSC--SWTLQVE 612 SM00408: domain 3 of 9, from 533 to 601: score 52.3, E = 6.4e-11 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL +e q+V ++C++sg p p++ W+ +g+p+ +++++ + ++ ++ +L hg00295 533 KENQTVKFRCEVSGIPKPEVAWFLeGTPVRrqegsievyedaGSHYL 579 tiknvsleDsGlYtCvArNsvg<-* + ++ DsG+Y+C+A+N+ g hg00295 580 CLLKARTRDSGTYSCTASNAQG 601 SM00409: domain 4 of 9, from 627 to 708: score 57.2, E = 2.1e-12 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ v eG++ +L+C++ +++ ++itW+ ++++ + +++ + hg00295 627 LKdCAVIEGQDFVLQCsVRgtpvpRITWLlngqpiqyarstceagva 673 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L+I+++ peD GtYtC a++ g++s+ ++++tV+ hg00295 674 eLHIqDALPEDH---GTYTCLAEnaLGQVSC--SAWVTVH 708 SM00408: domain 4 of 9, from 633 to 697: score 74.6, E = 1.3e-17 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn +eGq+++L+C ++g pvp ItWl +g+p++ +++ + + +L+i++ hg00295 633 IEGQDFVLQCSVRGTPVPRITWLLnGQPIQyarstceaGVAELHIQD 679 vsleDsGlYtCvArNsvg<-* + +eD G+YtC+A+N+ g hg00295 680 ALPEDHGTYTCLAENALG 697 SM00409: domain 5 of 9, from 736 to 820: score 53.2, E = 3.4e-11 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++ v+ G+ vt+t ++s+++++++ W+++++ + + + + +++ hg00295 736 LSdLKVMDGSQVTMTVqVSgnpppEVIWLhngneiqesedfhfeqrg 782 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++++L I++v peD+ GtYtC+a++++g++ + LtV+ hg00295 783 tqhsLCIqEVFPEDT---GTYTCEAWnsAGEVRT--QAVLTVQ 820 SM00408: domain 5 of 9, from 742 to 809: score 43.7, E = 2.4e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt G +Vt+t +sg+p p++ Wl++g +++++++ + +++++ +L hg00295 742 MDGSQVTMTVQVSGNPPPEVIWLHnGNEIQesedfhfeqrgTQHSLC 788 iknvsleDsGlYtCvArNsvg<-* i++v +eD G+YtC+A Ns+g hg00295 789 IQEVFPEDTGTYTCEAWNSAG 809 SM00409: domain 6 of 9, from 834 to 919: score 37.2, E = 2.3e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++vt+++G+sv ++C +++++ +t++W+++++ +++++ ++ hg00295 834 PRsVTASLGQSVLISCaIAgdpfpTVHWLrdgkalckdtghfevlqn 880 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + +L++++v+p ++ G Y +++ g+ s+ + L + hg00295 881 edvftLVLkKVQPWHA---GQYEILLKnrVGECSC--QVSLMLQ 919 SM00408: domain 6 of 9, from 840 to 908: score 29.8, E = 0.00038 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL GqsV + C +gdp p+++Wl++gk l +++++ + ++++ tL hg00295 840 SLGQSVLISCAIAGDPFPTVHWLRdGKALCkdtghfevlqneDVFTL 886 tiknvsleDsGlYtCvArNsvg<-* +k v++ ++G Y+ + N+vg hg00295 887 VLKKVQPWHAGQYEILLKNRVG 908 SM00409: domain 7 of 9, from 1211 to 1295: score 49.0, E = 6.2e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++v v eG + L+C++s++++ ti W+ ++++ ++++ ++ + hg00295 1211 LQdVHVAEGKKLLLQCqVSsdppaTIIWTlngktlkttkfiilsqeg 1257 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + + I+++ peD G Y C+a++++g+a++ + ++tV hg00295 1258 slcsVSIeKALPEDR---GLYKCVAKndAGQAEC--SCQVTVD 1295 SM00408: domain 7 of 9, from 1217 to 1284: score 50.0, E = 3e-10 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt eG + L+C +s dp ++I W+ +gk l +++ ++++s +++ hg00295 1217 AEGKKLLLQCQVSSDPPATIIWTLnGKTLKttkfiilsqegSLCSVS 1263 iknvsleDsGlYtCvArNsvg<-* i+ + +eD+GlY CvA N +g hg00295 1264 IEKALPEDRGLYKCVAKNDAG 1284 SM00409: domain 8 of 9, from 1351 to 1435: score 40.8, E = 1.8e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ v++Gesv+L +++++ + t tW++ +++ + + + + ++ hg00295 1351 PEdQKVRAGESVELFGkVTgtqpiTCTWMkfrkqiqesehmkvense 1397 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++++LtI ++ e+ G Yt ++++ gs ++ ++LtV hg00295 1398 ngskLTIlAARQEHC---GCYTLLVEnkLGSRQA--QVNLTVV 1435 SM00408: domain 8 of 9, from 1357 to 1424: score 10.3, E = 0.47 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + G+sV+L +++g + tW k k+++++++ + +++++gs Lt hg00295 1357 RAGESVELFGKVTGTQPITCTWMKfRKQIQesehmkvenseNGSKLT 1403 iknvsleDsGlYtCvArNsvg<-* i ++ e+ G Yt +++N+ g hg00295 1404 ILAARQEHCGCYTLLVENKLG 1424 SM00060: domain 1 of 1, from 1438 to 1520: score 52.8, E = 4.5e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. P+pP + + ++d+ s+ s+tlsW ++++++ + +Y+ + hg00295 1438 PDPPAGT--PCASDIRSS------SLTLSWYGSsydggsaVQSYSie 1476 ...................ytltgLkPgaepwteYefrVrAvngndaGeg +++ ++++++ + +++++ + +L P+ +eY+frVrA+n +G + hg00295 1477 iwdsanktwkelatcrstsFNVQDLLPD----HEYKFRVRAINV--YGTS 1520 <-* hg00295 - - SM00219: domain 1 of 1, from 1571 to 1826: score 7.6, E = 1.3e-11 *->ltlgkkLGeGaFGeVykGtlk..ieV.AVKtLkeda...keeFlrEa ++ LG+G FG+V++ + k++++V A K k+++ ++ke +++E+ hg00295 1571 YDIEERLGSGKFGQVFRLVEKktRKVwAGKFFKAYSakeKENIRQEI 1617 kiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLr +iM l +Hp +V+++ + e+ + +v+E ++gG L +++ hg00295 1618 SIMNCL--HHPKLVQCVDAFEEK-------ANIVMVLEIVSGGELFERII 1658 knrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk..vv + +l+ ++ ++++ QI++G eY++++++vH DL N++ ++ ++++ hg00295 1659 DEDFELTERECIKYMRQISEGVEYIHKQGIVHLDLKPENIMCVNKTgtRI 1708 KIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgk K DFGL+R l++ ++ g+ + APE++++ hg00295 1709 KLIDFGLARRLENA-------GSLKVLF--GTPEFV-----APEVINYEP 1744 FtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpk ++D WS GV ++ i+ G +P g ++ e l+++ + + hg00295 1745 IGYATDMWSIGVICY-ILVSGLSPFMG-----DNDNETLANVTSA-TWDF 1787 Pendl.piSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-* +++ ++ +d+ d ++ + d ++R +++ ++ l hg00295 1788 DDEAFdE-----ISDDAKDFISNLLKKDMKNRLDCTQClqHPWL 1826 SM00220: domain 1 of 1, from 1571 to 1826: score 328.5, E = 4.6e-94 *->YellkklGkGaFGkVylardkktgrlvAiKvik.......erilrEi Y++ + lG+G FG+V++ ++kkt ++ A K k + +++e+i++Ei hg00295 1571 YDIEERLGSGKFGQVFRLVEKKTRKVWAGKFFKaysakekENIRQEI 1617 kiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrgl +i+ +HP +V++ d+fe++ ++ +V+E ++G G+Lf+++ + + hg00295 1618 SIMNClHHPKLVQCVDAFEEkANIVMVLEIVSG--GELFERIIDEDFE-- 1663 rkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds....hvKl l+E+e+ +y+rQi +++eY+H+qgI+H DLKPeNi++ +++++++Kl hg00295 1664 ---LTErECIKYMRQISEGVEYIHKQGIVHLDLKPENIMCVNktgtRIKL 1710 aDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcily +DFGlAr+l++ ++ + + GTpe++APEv++ ++ g+ a D+WS+G+i y hg00295 1711 IDFGLARRLenagslKVLFGTPEFVAPEVInyePIGY-ATDMWSIGVICY 1759 ElltGkpPFp..qldlifkkig..............SpeakdLikklLvk +l++G PF ++++++++ ++ + +++ +++ ++ S++akd+i++lL+k hg00295 1760 ILVSGLSPFMgdNDNETLANVTsatwdfddeafdeiSDDAKDFISNLLKK 1809 dPekRlta.eaLedeldikaHPff<-* d ++Rl ++++L+ HP++ hg00295 1810 DMKNRLDCtQCLQ-------HPWL 1826 SM00409: domain 9 of 9, from 1921 to 2006: score 49.8, E = 3.5e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++++v+eG+ +++ C++++ +++++ W++++++ + +++ + + + hg00295 1921 IRdLEVVEGSAARFDCkIEgypdpEVVWFkddqsiresrhfqidyde 1967 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ +L+I++v +D + YtC a ++ g+a++ +++L+V+ hg00295 1968 dgncsLIIsDVCGDDD---AKYTCKAVnsLGEATC--TAELIVE 2006 SM00408: domain 9 of 9, from 1927 to 1995: score 65.5, E = 6.5e-15 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL eG ++++ C+ +g+p+p++ W+k+++++ ++++ + + +++++ +L hg00295 1927 VEGSAARFDCKIEGYPDPEVVWFKdDQSIResrhfqidydedGNCSL 1973 tiknvsleDsGlYtCvArNsvg<-* i++v +D+ +YtC+A Ns g hg00295 1974 IISDVCGDDDAKYTCKAVNSLG 1995 //