hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-01032611/chunk_1/iprscan-20080812-01032611.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hg00555
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00412.12.fs LIM domain                                     149.2    1.6e-42   2
PF00412.12.ls LIM domain                                     147.1    4.4e-41   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00412.12.fs   1/2     105   164 ..     1    61 []    74.0  8.9e-21
PF00412.12.ls   1/2     105   164 ..     1    61 []    76.0  1.1e-19
PF00412.12.fs   2/2     169   222 ..     1    55 [.    75.2    4e-21
PF00412.12.ls   2/2     169   225 ..     1    61 []    71.1  3.2e-18

Alignments of top-scoring domains:
PF00412.12.fs: domain 1 of 2, from 105 to 164: score 74.0, E = 8.9e-21
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegde.ffekd
                      CagCg++I+dr+l++ A+d +wH  C++C++C+ +Lg+ +++++ k 
     hg00555   105    CAGCGGKIADRFLLY-AMDSYWHSRCLKCSCCQAQLGDIGTsCYTKS 150  

                   gsklYCkhDyyklfg<-*
                   g  ++C++Dy +lfg   
     hg00555   151 G-MILCRNDYIRLFG    164  

PF00412.12.ls: domain 1 of 2, from 105 to 164: score 76.0, E = 1.1e-19
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegde.ffekd
                      CagCg++I+dr+l++ A+d +wH  C++C++C+ +Lg+ +++++ k 
     hg00555   105    CAGCGGKIADRFLLY-AMDSYWHSRCLKCSCCQAQLGDIGTsCYTKS 150  

                   gsklYCkhDyyklfg<-*
                   g  ++C++Dy +lfg   
     hg00555   151 G-MILCRNDYIRLFG    164  

PF00412.12.fs: domain 2 of 2, from 169 to 222: score 75.2, E = 4e-21
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C++Cg+ I + elv+rA+++v+H++CF+C++C+  L +gd+f+ ++g
     hg00555   169    CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYING 215  

                   sklYCkhD<-*
                     l C+hD   
     hg00555   216 -SLFCEHD    222  

PF00412.12.ls: domain 2 of 2, from 169 to 225: score 71.1, E = 3.2e-18
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C++Cg+ I + elv+rA+++v+H++CF+C++C+  L +gd+f+ ++g
     hg00555   169    CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYING 215  

                   sklYCkhDyyklfg<-*
                     l C+h   ++     
     hg00555   216 -SLFCEH---DRPT    225  

//