hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-01032611/chunk_1/iprscan-20080812-01032611.nocrc
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Query sequence: hg00555
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00132                                                 136.3    3.3e-36   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00132    1/2     104   158 ..     1    52 []    62.5  5.3e-14
SM00132    2/2     168   222 ..     1    52 []    73.8  2.2e-17

Alignments of top-scoring domains:
SM00132: domain 1 of 2, from 104 to 158: score 62.5, E = 5.3e-14
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg...tffekd
                      +CagCg +I +++ l a++ +wH  C+kCs+C+ +Lg+ ++ +++k 
     hg00555   104    RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDigtSCYTKS 150  

                   gklyCkdc<-*
                   g+++C+++   
     hg00555   151 GMILCRND    158  

SM00132: domain 2 of 2, from 168 to 222: score 73.8, E = 2.2e-17
                   *->kCagCgkpItg.devlralgkvwHpeCFkCskCkkpLgg..tffekd
                       C++Cg+ I +++ v+ra g+v+H +CF+Cs+C++ L+++++f+  +
     hg00555   168    ACSACGQSIPAsELVMRAQGNVYHLKCFTCSTCRNRLVPgdRFHYIN 214  

                   gklyCkdc<-*
                   g+l+C+++   
     hg00555   215 GSLFCEHD    222  

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