hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-01192235/chunk_1/iprscan-20080812-01192235.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hg00575y3
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  88.9    6.1e-22   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/4    1917  2061 ..     1    92 []    19.8     0.24
SM00382    2/4    2232  2383 ..     1    92 []     2.0       15
SM00382    3/4    2603  2753 ..     1    92 []    36.4  3.8e-06
SM00382    4/4    2945  3111 ..     1    92 []    30.6  0.00021

Alignments of top-scoring domains:
SM00382: domain 1 of 4, from 1917 to 2061: score 19.8, E = 0.24
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge....ggqrirl
                       g++    Gp G+GKT  ++al ++lg+ v+++++++  ++ ++ r+
   hg00575y3  1917    GGSPF---GPAGTGKTESVKALGHQLGRFVLVFNCDetfdFQAMGRI 1960 

                   alalark.dvlllDEitslld.............................
                    + l++ +    +DE ++l  + ++  +++ +  ++ ++++++ + ++ +
   hg00575y3  1961 FVGLCQVgAWGCFDEFNRLEErmlsavsqqvqciqealrehsnpnydkts 2010 

                   .................vtviattn......dldpallrrrfdrrivllr
                        ++++++ + + +  +++t+n++  ++  +p++l+  + r + + +
   hg00575y3  2011 apitcellnkqvkvspdMAIFITMNpgyagrSNLPDNLK-KLFRSLAMTK 2059 

                   il<-*
                   ++   
   hg00575y3  2060 PD    2061 

SM00382: domain 2 of 4, from 2232 to 2383: score 2.0, E = 15
                   *->pgevvllvGppGsGKTTlaralarllgp......gviyidge.....
                       ++ +++vGp+GsGK+   r l++ l++ ++ ++   +id+   +++
   hg00575y3  2232    INHGLMMVGPSGSGKSMAWRVLLKALERlegvegVAHIIDPKaiskd 2278 

                   .................ggqrirlalalark..............dvlll
                   +  +  + + ++  ++ + + +r++++ +r   ++++    +++ d  ++
   hg00575y3  2279 hlygtldpntrewtdglFTHVLRKIIDSVRGelqkrqwivfdgdvDPEWV 2328 

                   DEitslld..................vtviattndldpallrrrfdrriv
                     ++s ld+++++ + +++++++  +v++++ ++dl  a l+  +++ +v
   hg00575y3  2329 ENLNSVLDdnklltlpngerlslppnVRIMFEVQDLKYATLATVSRCGMV 2378 

                   llril<-*
                       +   
   hg00575y3  2379 WFSED    2383 

SM00382: domain 3 of 4, from 2603 to 2753: score 36.4, E = 3.8e-06
                   *->pgevvllvGppGsGKTTlaralarllgp.gviyidge....ggqrir
                       ++++ l+GppGsGKT ++   +r l+   v+ ++ ++    +  ++
   hg00575y3  2603    EHKPLVLCGPPGSGKTMTLFSALRALPDmEVVGLNFSsattPELLLK 2649 

                   lalalark.................dvlllDEitslld............
                        +++++++++    + + ++  vl++DEi+    ++ + ++  +  
   hg00575y3  2650 TFDHYCEYrrtpngvvlapvqlgkwLVLFCDEINLPDMdkygtqrvisfi 2699 

                   ......................vtviattn...dldpallrrrfdrrivl
                   ++  ++++  + +++   +++++++++++n+++d+++++l +rf r++ +
   hg00575y3  2700 rqmvehggfyrtsdqtwvklerIQFVGACNpptDPGRKPLSHRFLRHVPV 2749 

                   lril<-*
                     ++   
   hg00575y3  2750 VYVD    2753 

SM00382: domain 4 of 4, from 2945 to 3111: score 30.6, E = 0.00021
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge....ggqrirl
                      p +++ll+G +G+GKTTl r +a+  g +v+ i   ++  g++  ++
   hg00575y3  2945    PQGHLLLIGVSGAGKTTLSRFVAWMNGLSVYQIKVHrkytGEDFDED 2991 

                   alalark.......dvlllDEitslld.......................
                   +++ +r+++ ++ +   ++DE + l  + +++ + ++ +++  ++ ++++
   hg00575y3  2992 LRTVLRRsgcknekIAFIMDESNVLDSgflermntllangevpglfegde 3041 

                   ....................................vtviattn.....d
                      +  + +++ +++++ +++++++ +   ++  ++++v++t+n+++++ 
   hg00575y3  3042 yatlmtqckegaqkeglmldsheelykwftsqvirnLHVVFTMNpssegL 3091 

                   ldpallrrrfdrrivllril<-*
                   +d+a++ +++  r vl   +   
   hg00575y3  3092 KDRAATSPALFNRCVLNWFG    3111 

//