hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-17303346/chunk_1/iprscan-20090630-17303346.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hg00622s2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00176.13.ls SNF2 family N-terminal domain 199.3 8.6e-57 1 PF00176.13.fs SNF2 family N-terminal domain 197.5 3e-56 1 PF07529.4.ls HSA 117.5 3.4e-32 1 PF07529.4.fs HSA 115.6 1.4e-31 1 PF00271.21.fs Helicase conserved C-terminal domain 27.1 2.7e-07 1 PF00271.21.ls Helicase conserved C-terminal domain 26.5 4.7e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07529.4.ls 1/1 765 836 .. 1 73 [] 117.5 3.4e-32 PF07529.4.fs 1/1 765 836 .. 1 73 [] 115.6 1.4e-31 PF00176.13.fs 1/1 1059 1339 .. 1 355 [] 197.5 3e-56 PF00176.13.ls 1/1 1059 1339 .. 1 355 [] 199.3 8.6e-57 PF00271.21.fs 1/1 1817 1884 .. 1 65 [. 27.1 2.7e-07 PF00271.21.ls 1/1 1817 1898 .. 1 76 [] 26.5 4.7e-05 Alignments of top-scoring domains: PF07529.4.ls: domain 1 of 1, from 765 to 836: score 117.5, E = 3.4e-32 *->qkleeerRrKqhhdelLeemqwhakDFkeehKwklakakKmakavaq +kl+e +R+K+h+d+lLeemqw+a+DF++e++wk+a+akK+ ++v + hg00622s2 765 PKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVVR 811 YhqnkekeeqrreekeekqRlqkLaa<-* +h++k+ +e+r +kee++Rl+++aa hg00622s2 812 HHEEKQLREERG-KKEEQSRLRRIAA 836 PF07529.4.fs: domain 1 of 1, from 765 to 836: score 115.6, E = 1.4e-31 *->qkleeerRrKqhhdelLeemqwhakDFkeehKwklakakKmakavaq +kl+e +R+K+h+d+lLeemqw+a+DF++e++wk+a+akK+ ++v + hg00622s2 765 PKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVVR 811 YhqnkekeeqrreekeekqRlqkLaa<-* +h++k+ +e+r +kee++Rl+++aa hg00622s2 812 HHEEKQLREERG-KKEEQSRLRRIAA 836 PF00176.13.fs: domain 1 of 1, from 1059 to 1339: score 197.5, E = 3e-56 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQ+ G+ WL+ ly++ +l+gILADE GLGKT+Q I+++a+ hg00622s2 1059 YQKIGLDWLAKLYRK--------NLNGILADEAGLGKTVQIIAFFAH 1097 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns l ++ gp+LvV+ + + W+ E+++w+p l+i+ y+g+ ++ hg00622s2 1098 LACNEGNW----GPHLVVVRSCNILKWELELKRWCP-GLKILSYIGSHRE 1142 rdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklfin +++ + +++++ f+v+itsY + + ++ hg00622s2 1143 L-----KAKRQEWAEPN---SFHVCITSYTQFFR-----GLTAFTR--VR 1177 wryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkEl w+ +++DE r+K + + +a+ +l ++ RLlL Pl+N El hg00622s2 1178 WKCLVIDEM-QRVKGMTERH--WEAVFTLQ-SQQRLLLIDSPLHNTFLEL 1223 wsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefLr w +++Fl Pgi s+ + p+ e++d hg00622s2 1224 WTMVHFLVPGI--SR-------PYLSSPLRAPSEESQD------------ 1252 ykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcels y + k + rLh + +pf+LRR+K dvek+L + K+e+vl+c+ls hg00622s2 1253 YYH------KVVIRLHRVTQPFILRRTKRDVEKQLTK--KYEHVLKCRLS 1294 klQkelYkkflkeeskdvkaindserreggkeknegksrllnlimqLrKi Qk lY + + + + e k+ + ++l ++ +L++i hg00622s2 1295 NRQKALYEDVI-------LQPGTQE---ALKS--GHFVNVLSILVRLQRI 1332 cNfHPyLf<-* cN HP+L+ hg00622s2 1333 CN-HPGLV 1339 PF00176.13.ls: domain 1 of 1, from 1059 to 1339: score 199.3, E = 8.6e-57 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQ+ G+ WL+ ly++ +l+gILADE GLGKT+Q I+++a+ hg00622s2 1059 YQKIGLDWLAKLYRK--------NLNGILADEAGLGKTVQIIAFFAH 1097 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns l ++ gp+LvV+ + + W+ E+++w+p l+i+ y+g+ ++ hg00622s2 1098 LACNEGNW----GPHLVVVRSCNILKWELELKRWCP-GLKILSYIGSHRE 1142 rdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklfin +++ + +++++ f+v+itsY + + ++ hg00622s2 1143 L-----KAKRQEWAEPN---SFHVCITSYTQFFR-----GLTAFTR--VR 1177 wryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkEl w+ +++DE r+K + + +a+ +l ++ RLlL Pl+N El hg00622s2 1178 WKCLVIDEM-QRVKGMTERH--WEAVFTLQ-SQQRLLLIDSPLHNTFLEL 1223 wsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefLr w +++Fl Pgi s+ + p+ e++d hg00622s2 1224 WTMVHFLVPGI--SR-------PYLSSPLRAPSEESQD------------ 1252 ykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcels y + k + rLh + +pf+LRR+K dvek+L + K+e+vl+c+ls hg00622s2 1253 YYH------KVVIRLHRVTQPFILRRTKRDVEKQLTK--KYEHVLKCRLS 1294 klQkelYkkflkeeskdvkaindserreggkeknegksrllnlimqLrKi Qk lY + + + + e k+ + ++l ++ +L++i hg00622s2 1295 NRQKALYEDVI-------LQPGTQE---ALKS--GHFVNVLSILVRLQRI 1332 cNfHPyLf<-* cN HP+L+ hg00622s2 1333 CN-HPGLV 1339 PF00271.21.fs: domain 1 of 1, from 1817 to 1884: score 27.1, E = 2.7e-07 *->ll.epgikvarlhGglsqeeReeilekFrngks..kvLvaTdvagrG +l+ + + ++r++ + s+e+R+e++++F+++++ + +++T +G hg00622s2 1817 FLnFHYLTYVRIDENASSEQRQELMRSFNRDRRifCAILSTHSRTTG 1863 iDipdvnlVInydlpwnpesy<-* i++ ++++V++yd + np ++ hg00622s2 1864 INLVEADTVVFYDNDLNPVMD 1884 PF00271.21.ls: domain 1 of 1, from 1817 to 1898: score 26.5, E = 4.7e-05 *->ll.epgikvarlhGglsqeeReeilekFrngks..kvLvaTdvagrG +l+ + + ++r++ + s+e+R+e++++F+++++ + +++T +G hg00622s2 1817 FLnFHYLTYVRIDENASSEQRQELMRSFNRDRRifCAILSTHSRTTG 1863 iDipdvnlVInydlpwnpes...yiQRiGRaGRaG<-* i++ ++++V++yd + np ++ + ++R+GR + hg00622s2 1864 INLVEADTVVFYDNDLNPVMdakAQEWCDRIGRCK 1898 //