hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-17303346/chunk_1/iprscan-20090630-17303346.nocrc
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Query sequence: hg00622s2
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00573                                                 125.1    7.9e-33   1
SM00487                                                  68.6    7.9e-16   1
SM00490                                                  28.2     0.0011   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00573      1/1     765   836 ..     1    73 []   125.1  7.9e-33
SM00487      1/1    1052  1241 ..     1   219 []    68.6  7.9e-16
SM00490      1/1    1812  1898 ..     1    86 []    28.2   0.0011

Alignments of top-scoring domains:
SM00573: domain 1 of 1, from 765 to 836: score 125.1, E = 7.9e-33
                   *->qkleeerRrKqhwdhlLeemiwhakDFkeerKwkiaaakKvakaVmd
                      +kl+e++R+K+hwd+lLeem+w+a+DF++er+wk+aaakK++++V +
   hg00622s2   765    PKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVVR 811  

                   YhqnkekeeeReeekneknrlrkLae<-*
                   +h++k+ +eeR  +k+e++rlr++a+   
   hg00622s2   812 HHEEKQLREERG-KKEEQSRLRRIAA    836  

SM00487: domain 1 of 1, from 1052 to 1241: score 68.6, E = 7.9e-16
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                      +++ lr+yQk +++wl +  +++ ++ila++ G+GKT+ ++++ + +
   hg00622s2  1052    LYgALRDYQKIGLDWLAKLyrknLNGILADEAGLGKTV-QIIAFFAH 1097 

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk
                   l ++      +g+++++Lv+v +      w+ elk+++p+        lk
   hg00622s2  1098 LACN------EGNWGPHLVVVRSCNILK-WELELKRWCPG--------LK 1132 

                   vvglygG.sktkekeqlrklksgkt...dilvtTpgrLldll.ngkglsl
                   +++++g+++    + + ++ ++  +++ ++ +t++  +++ l+    +  
   hg00622s2  1133 ILSYIGShR----ELKAKRQEWAEPnsfHVCITSYTQFFRGLtA---FTR 1175 

                   .nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp
                    +++++++DE +r+++         ++++e ++ +  ++ qrlll   p 
   hg00622s2  1176 vRWKCLVIDEMQRVKG-------MTERHWEaVFTL--QSQQRLLLIDSP- 1215 

                   eienllklflnlpelfpnpvfisvgftlepieqf<-*
                    + n+  +++        ++f+++g  + p+      
   hg00622s2  1216 -LHNTFLELWT------MVHFLVPGI-SRPYLSS    1241 

SM00490: domain 1 of 1, from 1812 to 1898: score 28.2, E = 0.0011
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki..kvL
                      d+l+ +L+ ++    + ++r++ + s+e+R+e++++F+++++  + +
   hg00622s2  1812    DILEMFLNFHY----LTYVRIDENASSEQRQELMRSFNRDRRifCAI 1854 

                   vaTdvaerGlDipgvdlVInydlpwspasyiQR...iGRaGRaG<-*
                   ++T    +G+++ ++d+V++yd +++p ++  +++  +R+GR +   
   hg00622s2  1855 LSTHSRTTGINLVEADTVVFYDNDLNPVMDAKAqewCDRIGRCK    1898 

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