hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-16303793/chunk_1/iprscan-20090525-16303793.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hg00912 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00651.21.ls BTB/POZ domain 102.0 1.6e-27 1 PF00651.21.fs BTB/POZ domain 100.2 1.8e-27 1 PF00096.16.ls Zinc finger, C2H2 type 42.7 1.1e-09 2 PF00096.16.fs Zinc finger, C2H2 type 38.8 1.7e-08 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 69 173 .. 1 135 [] 100.2 1.8e-27 PF00651.21.ls 1/1 69 173 .. 1 135 [] 102.0 1.6e-27 PF00096.16.fs 1/2 442 464 .. 1 24 [] 25.0 5.6e-05 PF00096.16.ls 1/2 442 464 .. 1 24 [] 27.0 6.4e-05 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 69 to 173: score 100.2, E = 1.8e-27 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln +r++g++cDV L+v+ g++++AHKavLaa+SpYF++ hg00912 69 LNRHRLEGKFCDVSLLVQ--------GRELRAHKAVLAAASPYFHDK 107 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks ++ + +++ +++ + +++++fe lL+ iY+g+l ++ hg00912 108 LLLG--------DAPRL-TLP-SVIEADAFEGLLQLIYSGRLRLP----- 142 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* ++ + + L A + lq++ +vd+C e l + hg00912 143 ------LDALPAHLLVA-SGLQMWQVVDQCSEILRELE 173 PF00651.21.ls: domain 1 of 1, from 69 to 173: score 102.0, E = 1.6e-27 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln +r++g++cDV L+v+ g++++AHKavLaa+SpYF++ hg00912 69 LNRHRLEGKFCDVSLLVQ--------GRELRAHKAVLAAASPYFHDK 107 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks ++ + +++ +++ + +++++fe lL+ iY+g+l ++ hg00912 108 LLLG--------DAPRL-TLP-SVIEADAFEGLLQLIYSGRLRLP----- 142 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* ++ + + L A + lq++ +vd+C e l + hg00912 143 ------LDALPAHLLVA-SGLQMWQVVDQCSEILRELE 173 PF00096.16.fs: domain 1 of 2, from 442 to 464: score 25.0, E = 5.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +C+k+F+ k++L+ H++tH hg00912 442 FGCG-ICNKRFKLKHHLTEHMKTH 464 PF00096.16.ls: domain 1 of 2, from 442 to 464: score 27.0, E = 6.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +C+k+F+ k++L+ H++tH hg00912 442 FGCG-ICNKRFKLKHHLTEHMKTH 464 //