hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-16303793/chunk_1/iprscan-20090525-16303793.nocrc
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Query sequence: hg00912
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00225                                                  85.6    6.1e-21   1
SM00355                                                  28.9    0.00071   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      79   173 ..     1   114 []    85.6  6.1e-21
SM00355      1/2     442   464 ..     1    23 []    24.4    0.016
SM00355      2/2     469   489 ..     1    23 []     4.5       99

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 79 to 173: score 85.6, E = 6.1e-21
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv l+v+g         ++++a  HkavLaa    SpyF++ ++ +
     hg00912    79    CDVSLLVQG---------RELRA--HKAVLAAA---SPYFHDKLLLg 111  

                   ....ieldDeallievspeaFralLnflYt.kldlpeedvenveelLelA
                   + ++ +l+      ++ ++aF+ lL+ +Y+++l+lp +    +   L  A
     hg00912   112 daprLTLPS-----VIEADAFEGLLQLIYSgRLRLPLD---ALPAHLLVA 153  

                   dfldSYGqip.lvelCeefllknl<-*
                   + l    q+ ++v++C e+l + +   
     hg00912   154 SGL----QMWqVVDQCSEILRELE    173  

SM00355: domain 1 of 2, from 442 to 464: score 24.4, E = 0.016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C i C+k+f+ k++L++Hm++H   
     hg00912   442    FGCGI-CNKRFKLKhHLTEHMKTH    464  

SM00355: domain 2 of 2, from 469 to 489: score 4.5, E = 99
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ Cg++f+ +  + rH       
     hg00912   469    HACPH-CGRRFRVHaCFLRHRD--    489  

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