hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-01553152/chunk_1/iprscan-20080812-01553152.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hg00926 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 256.6 4.7e-74 3 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 250.8 2.7e-72 3 PF00791.10.fs ZU5 domain 216.6 5e-62 2 PF00791.10.ls ZU5 domain 208.1 1.8e-59 1 PF07653.7.fs Variant SH3 domain 53.7 8.2e-15 1 PF07653.7.ls Variant SH3 domain 55.5 1.6e-13 1 PF00625.11.fs Guanylate kinase 25.9 1.3e-06 1 PF00018.18.ls SH3 domain -6.8 0.096 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.ls 1/3 16 100 .. 1 86 [] 90.9 3.6e-24 PF00595.14.fs 1/3 16 100 .. 1 86 [] 88.9 2.4e-24 PF00595.14.fs 2/3 179 254 .. 1 86 [] 79.5 1e-21 PF00595.14.ls 2/3 179 254 .. 1 86 [] 81.5 2.5e-21 PF00595.14.ls 3/3 416 494 .. 1 86 [] 84.2 3.7e-22 PF00595.14.fs 3/3 416 494 .. 1 86 [] 82.3 1.8e-22 PF00018.18.ls 1/1 512 565 .. 1 59 [] -6.8 0.096 PF07653.7.ls 1/1 513 575 .. 1 69 [] 55.5 1.6e-13 PF07653.7.fs 1/1 513 575 .. 1 69 [] 53.7 8.2e-15 PF00625.11.fs 1/1 686 731 .. 49 95 .. 25.9 1.3e-06 PF00791.10.ls 1/1 1625 1730 .. 1 107 [] 208.1 1.8e-59 PF00791.10.fs 1/2 1625 1730 .. 1 107 [] 206.2 7.1e-59 Alignments of top-scoring domains: PF00595.14.ls: domain 1 of 3, from 16 to 100: score 90.9, E = 3.6e-24 *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea +vtl++ + g+G+ i+gg d+++ ++++++i++s+vl+G g+Ae hg00926 16 TVTLHRA-PGFGFGIAISGGRDNPHfqsgETSIVISDVLKG-GPAEG 60 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + Lq++D++ vNG+++ n++h++av++l++sg+ ++t++ hg00926 61 Q--LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGK-NAKITIR 100 PF00595.14.fs: domain 1 of 3, from 16 to 100: score 88.9, E = 2.4e-24 *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea +vtl++ + g+G+ i+gg d+++ ++++++i++s+vl+G g+Ae hg00926 16 TVTLHRA-PGFGFGIAISGGRDNPHfqsgETSIVISDVLKG-GPAEG 60 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + Lq++D++ vNG+++ n++h++av++l++sg+ ++t++ hg00926 61 Q--LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGK-NAKITIR 100 PF00595.14.fs: domain 2 of 3, from 179 to 254: score 79.5, E = 1e-21 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +vtl k++k++ G+++++ +ifv+e++++ + A+++G + hg00926 179 KVTLVKSRKNEEYGLRLAS--------HIFVKEISQD-SLAARDGNI 216 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* q+GD++l++NG+ +en+s+ +a+ ++ +s+g +++++v+ hg00926 217 QEGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQ 254 PF00595.14.ls: domain 2 of 3, from 179 to 254: score 81.5, E = 2.5e-21 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +vtl k++k++ G+++++ +ifv+e++++ + A+++G + hg00926 179 KVTLVKSRKNEEYGLRLAS--------HIFVKEISQD-SLAARDGNI 216 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* q+GD++l++NG+ +en+s+ +a+ ++ +s+g +++++v+ hg00926 217 QEGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQ 254 PF00595.14.ls: domain 3 of 3, from 416 to 494: score 84.2, E = 3.7e-22 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++++++ k+ ++G++++gg+d gifv+ vl++s+aA+ g L hg00926 416 KLVKFR--KGDSVGLRLAGGNDV----GIFVAGVLEDSPAAKEG--L 454 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* ++GDqIl+vN++d++n+ eeavl+l + ++++evt++ + hg00926 455 EEGDQILRVNNVDFTNIIREEAVLFLLDLPKgEEVTILAQ 494 PF00595.14.fs: domain 3 of 3, from 416 to 494: score 82.3, E = 1.8e-22 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++++++ k+ ++G++++gg+d gifv+ vl++s+aA+ g L hg00926 416 KLVKFR--KGDSVGLRLAGGNDV----GIFVAGVLEDSPAAKEG--L 454 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* ++GDqIl+vN++d++n+ eeavl+l + ++++evt++ + hg00926 455 EEGDQILRVNNVDFTNIIREEAVLFLLDLPKgEEVTILAQ 494 PF00018.18.ls: domain 1 of 1, from 512 to 565: score -6.8, E = 0.096 *->kkvvALYDYearesdELsFkkGDvitvleksdd...pgWWkgrlkgt + + + Ye++++ LsF kG+v+ v++ +++ + W+ r + hg00926 512 FYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNgklGSWLAIRIGKN 558 gGkeGliPsNYVepv<-* + ke Ve hg00926 559 H-KE-------VERG 565 PF07653.7.ls: domain 1 of 1, from 513 to 575: score 55.5, E = 1.6e-13 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd...g y+r++++y+ +++++ Ls+ kG+v++V ++ ++++ g hg00926 513 YIRTHFEYEK-ESPYG------LSFNKGEVFRVV----DTLYNgklG 548 wwegeslggGrr.r.RGlvPssaveel<-* +w++ ++g+++++++RG +P+++++e+ hg00926 549 SWLAIRIGKNHKeVeRGIIPNKNRAEQ 575 PF07653.7.fs: domain 1 of 1, from 513 to 575: score 53.7, E = 8.2e-15 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd...g y+r++++y+ +++++ Ls+ kG+v++V ++ ++++ g hg00926 513 YIRTHFEYEK-ESPYG------LSFNKGEVFRVV----DTLYNgklG 548 wwegeslggGrr.r.RGlvPssaveel<-* +w++ ++g+++++++RG +P+++++e+ hg00926 549 SWLAIRIGKNHKeVeRGIIPNKNRAEQ 575 PF00625.11.fs: domain 1 of 1, from 686 to 731: score 25.9, E = 1.3e-06 *->aVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelek +++q++ ++k+++LDv p++v +l a+ + P++vF P S+q++++ hg00926 686 TIKQIIDQDKHALLDVTPNAVDRLNYAQWY-PIVVFLNPDSKQGVKT 731 <-* hg00926 - - PF00791.10.ls: domain 1 of 1, from 1625 to 1730: score 208.1, E = 1.8e-59 *->tsflvsgtfdarGGsLrgprHtGVsiiIPpgaipqgtrytcylvkhk ++++++g+f+++GG+L++++ tGVsiiIP+gaip+g+++++y+++++ hg00926 1625 VVATARGIFNSNGGVLSSIE-TGVSIIIPQGAIPEGVEQEIYFKVCR 1670 kestpPPlDkeegetLlSpiVecGPtGalFlrPViLevPHcAslrpkewe ++s++PPlDke+getLlSp+V+cGP+G++Fl+PV+L++PHcAs+ p+ w+ hg00926 1671 DNSILPPLDKEKGETLLSPLVMCGPHGLKFLKPVELRLPHCASMTPDGWS 1720 lvlLrsdngg<-* + l+ sd + hg00926 1721 FALKSSDSSS 1730 PF00791.10.fs: domain 1 of 2, from 1625 to 1730: score 206.2, E = 7.1e-59 *->tsflvsgtfdarGGsLrgprHtGVsiiIPpgaipqgtrytcylvkhk ++++++g+f+++GG+L++++ tGVsiiIP+gaip+g+++++y+++++ hg00926 1625 VVATARGIFNSNGGVLSSIE-TGVSIIIPQGAIPEGVEQEIYFKVCR 1670 kestpPPlDkeegetLlSpiVecGPtGalFlrPViLevPHcAslrpkewe ++s++PPlDke+getLlSp+V+cGP+G++Fl+PV+L++PHcAs+ p+ w+ hg00926 1671 DNSILPPLDKEKGETLLSPLVMCGPHGLKFLKPVELRLPHCASMTPDGWS 1720 lvlLrsdngg<-* + l+ sd + hg00926 1721 FALKSSDSSS 1730 //