hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-01553152/chunk_1/iprscan-20080812-01553152.nocrc
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Query sequence: hg00926
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                 211.4    7.8e-59   3
SM00218                                                 204.1    1.2e-56   1
SM00072                                                 179.0    4.6e-49   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/3      25   103 ..     1    80 []    67.1  2.2e-15
SM00228    2/3     189   257 ..     1    80 []    72.5  5.2e-17
SM00228    3/3     424   497 ..     1    80 []    71.9  8.2e-17
SM00072    1/1     599   787 ..     1   203 []   179.0  4.6e-49
SM00218    1/1    1625  1730 ..     1   115 []   204.1  1.2e-56

Alignments of top-scoring domains:
SM00228: domain 1 of 3, from 25 to 103: score 67.1, E = 2.2e-15
                   *->gglGfsivg............gifvssvvpGspAakaGrkslglLkv
                       g+G+ i+g++++++ +++++ i++s+v++G+pA+         L++
     hg00926    25    FGFGIAISGgrdnphfqsgetSIVISDVLKGGPAEGQ-------LQE 64   

                   GDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +D++  VNG +s++++ h+ av+ l+k+g+       ++t++R++   
     hg00926    65 NDRVAMVNG-VSMDNVEHAFAVQQLRKSGK-----NAKITIRRKK    103  

SM00228: domain 2 of 3, from 189 to 257: score 72.5, E = 5.2e-17
                   *->gglGfsivggifvssvvpGspAakaGrkslglLkvGDvIleVNGets
                      + +G++++++ifv+++  +s Aa++G+     +++GDv+l++NG t+
     hg00926   189    EEYGLRLASHIFVKEISQDSLAARDGN-----IQEGDVVLKING-TV 229  

                   vegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +e+++  +a  l+ +++g     k++++v+R++   
     hg00926   230 TENMSLTDAKTLIERSKG-----KLKMVVQRDE    257  

SM00228: domain 3 of 3, from 424 to 497: score 71.9, E = 8.2e-17
                   *->gglGfsivg....gifvssvvpGspAakaGrkslglLkvGDvIleVN
                       + G++++g+++ gifv++v+++spAak G      L +GD+Il+VN
     hg00926   424    DSVGLRLAGgndvGIFVAGVLEDSPAAKEG------LEEGDQILRVN 464  

                   GetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   + ++ ++   eeav++l   ++   Ge+vt++ ++++   
     hg00926   465 N-VDFTNIIREEAVLFLLDLPK---GEEVTILAQKKK    497  

SM00072: domain 1 of 1, from 599 to 787: score 179.0, E = 4.6e-49
                   *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE
                      ++R+  + +  ++++++l a  +q+  ++p+++++V++++++ Rp++
     hg00926   599    GLRS-SKRNL-RKSREDLSAQPVQT--KFPAYERVVLREAGFLRPVT 641  

                   vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnl.yYGTskesvrqva
                   ++GP++D+++++L+ e ++  + +k  +++  +++++ +++++++++q++
     hg00926   642 IFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQRsSGIIRLHTIKQII 691  

                   ekGKhclLDidpqgvkqlkkarRkselnpiviFIapPsleeleerlrgae
                   +++Kh+lLD++p++v++l++a    +++piv+F+  P+++++ + +r+  
     hg00926   692 DQDKHALLDVTPNAVDRLNYA----QWYPIVVFLN-PDSKQGVKTMRM-- 734  

                   qRgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddledayYkeLk
                    R+++ +++++++l+++++k+ +     +hlF+++i++++++d +Y  Lk
     hg00926   735 -RLCPESRKSARKLYERSHKLRKNN---HHLFTTTINLNSMNDGWYGALK 780  

                   eileaeq<-*
                   e+++++q   
     hg00926   781 EAIQQQQ    787  

SM00218: domain 1 of 1, from 1625 to 1730: score 204.1, E = 1.2e-56
                   *->psflvsgtvdsrGGrLrgprHsGvrliiPpgAipqGtryecYlvvhk
                      ++++++g+++s+GG+L++++ +Gv++iiP+gAip+G+++e+Y++v++
     hg00926  1625    VVATARGIFNSNGGVLSSIE-TGVSIIIPQGAIPEGVEQEIYFKVCR 1670 

                   klstpPPLDkeegEtLLSPvvecGPCDVSmSAhGalllrPViLevpHCAs
                   ++s++PPLDke+gEtLLSP+v+cGP       hG+++l+PV+L++pHCAs
     hg00926  1671 DNSILPPLDKEKGETLLSPLVMCGP-------HGLKFLKPVELRLPHCAS 1713 

                   lrprdkwelvllrsengg<-*
                    +p+  w++ l+ s+ ++   
     hg00926  1714 MTPDG-WSFALKSSDSSS    1730 

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