hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-14550050/chunk_1/iprscan-20090618-14550050.nocrc
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Query sequence: hg01171
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       84.2    3.7e-25   1
PF00169.19.ls PH domain                                       86.2    9.6e-23   1
PF01852.10.fs START domain                                    68.5    2.2e-21   1
PF01852.10.ls START domain                                    70.4    5.3e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1     153   246 ..     1    92 []    84.2  3.7e-25
PF00169.19.ls   1/1     153   246 ..     1    92 []    86.2  9.6e-23
PF01852.10.fs   1/1     527   748 ..     1   244 []    68.5  2.2e-21
PF01852.10.ls   1/1     527   748 ..     1   244 []    70.4  5.3e-18

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 153 to 246: score 84.2, E = 3.7e-25
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk...kkpkgsip
                      v+++G L+k+++++ +w++R++vL+++ L+yyk+++++++ ++gsi 
     hg01171   153    VERCGVLSKWTnYIHGWQDRWVVLKNNALSYYKSEDeteYGCRGSIC 199  

                   LsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair
                   Ls++ +t+++   +++ F i+ +d  +++l+a ++++r++W++ai+++  
     hg01171   200 LSKAVITPHDF--DECRFDISVnDS-VWYLRAQDPDHRQQWIDAIEQHKT 246  

                   <-*
                      
     hg01171     -     -    

PF00169.19.ls: domain 1 of 1, from 153 to 246: score 86.2, E = 9.6e-23
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk...kkpkgsip
                      v+++G L+k+++++ +w++R++vL+++ L+yyk+++++++ ++gsi 
     hg01171   153    VERCGVLSKWTnYIHGWQDRWVVLKNNALSYYKSEDeteYGCRGSIC 199  

                   LsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair
                   Ls++ +t+++   +++ F i+ +d  +++l+a ++++r++W++ai+++  
     hg01171   200 LSKAVITPHDF--DECRFDISVnDS-VWYLRAQDPDHRQQWIDAIEQHKT 246  

                   <-*
                      
     hg01171     -     -    

PF01852.10.fs: domain 1 of 1, from 527 to 748: score 68.5, E = 2.2e-21
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                      e +  + +   ++  +++++W +++    e+ +  ++++++e+++  
     hg01171   527    EEMVQNHMTYSLQDVGGDANWQLVV----EEGEMKVYRREVEENGI- 568  

                   kppGlkdsgeasRasgvVpmvlaFllveellddmeyraqWdkdvrciVsk
                            ++++a ++V  v+   + + ++++   r  W ++++     
     hg01171   569 -------VLDPLKATHAVKGVTGHEVCNYFWNVD-VRNDWETTIE----N 606  

                   aetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDdH
                     ++e++ ++      +++ y+ ++ ++  p+s  RD+++++ +r+    
     hg01171   607 FHVVETLADN------AIIIYQTHKRVW--PASQ-RDVLYLSVIRK---- 643  

                   RFlrd......gvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliep
                     +++ +++++++++++  Svd+++ p     +  +vRa+  +++++ + 
     hg01171   644 --IPAltendpETWIVCNFSVDHDSAPL----NNRCVRAKINVAMICQTL 687  

                   cgngpek.........skvtwvehvDlkgwlPvhwllrslvksgmafgak
                   ++ +   ++ ++++  +k+t+v +v+++gw P  ++lr + k+++++++k
     hg01171   688 VSPPEGNqeisrdnilCKITYVANVNPGGWAP-ASVLRAVAKREYPKFLK 736  

                   twvatlqrlcek<-*
                   ++++ +q+ ++    
     hg01171   737 RFTSYVQEKTAG    748  

PF01852.10.ls: domain 1 of 1, from 527 to 748: score 70.4, E = 5.3e-18
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                      e +  + +   ++  +++++W +++    e+ +  ++++++e+++  
     hg01171   527    EEMVQNHMTYSLQDVGGDANWQLVV----EEGEMKVYRREVEENGI- 568  

                   kppGlkdsgeasRasgvVpmvlaFllveellddmeyraqWdkdvrciVsk
                            ++++a ++V  v+   + + ++++   r  W ++++     
     hg01171   569 -------VLDPLKATHAVKGVTGHEVCNYFWNVD-VRNDWETTIE----N 606  

                   aetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDdH
                     ++e++ ++      +++ y+ ++ ++  p+s  RD+++++ +r+    
     hg01171   607 FHVVETLADN------AIIIYQTHKRVW--PASQ-RDVLYLSVIRK---- 643  

                   RFlrd......gvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliep
                     +++ +++++++++++  Svd+++ p     +  +vRa+  +++++ + 
     hg01171   644 --IPAltendpETWIVCNFSVDHDSAPL----NNRCVRAKINVAMICQTL 687  

                   cgngpek.........skvtwvehvDlkgwlPvhwllrslvksgmafgak
                   ++ +   ++ ++++  +k+t+v +v+++gw P  ++lr + k+++++++k
     hg01171   688 VSPPEGNqeisrdnilCKITYVANVNPGGWAP-ASVLRAVAKREYPKFLK 736  

                   twvatlqrlcek<-*
                   ++++ +q+ ++    
     hg01171   737 RFTSYVQEKTAG    748  

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