hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-14550050/chunk_1/iprscan-20090618-14550050.nocrc
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Query sequence: hg01171
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                  84.0    1.8e-20   1
SM00234                                                  79.2    5.1e-19   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1     153   248 ..     1    82 []    84.0  1.8e-20
SM00234     1/1     527   748 ..     1   248 []    79.2  5.1e-19

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 153 to 248: score 84.0, E = 1.8e-20
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk.....kpkgsip
                      v+++G L+k+++  ++w++r++vL+n+ L+yyks+++++  ++gsi 
     hg01171   153    VERCGVLSKWTnyIhGWQDRWVVLKNNALSYYKSEdeteyGCRGSIC 199  

                   Lsgcsvre.p....cFeivt.drtlllqAeseeereeWvealqsaiaka<
                   Ls++ +++++ ++  F i+ +d +++l+A ++++r++W++a++++  ++ 
     hg01171   200 LSKAVITPhDfdecRFDISVnDSVWYLRAQDPDHRQQWIDAIEQHKTES  248  

                   -*
                     
     hg01171     -    -    

SM00234: domain 1 of 1, from 527 to 748: score 79.2, E = 5.1e-19
                   *->evaeeaanellklaassekgWvlspetgeiengdevlsiledgqnpk
                      e ++ + +   ++   ++++W l++    +e +++v++++++     
     hg01171   527    EEMVQNHMTYSLQDVGGDANWQLVV----EEGEMKVYRREVEENG-- 567  

                   qglkvsgealravgvvpmvcaedlvaellddgeyrkeWdknfagivskae
                          ++l+a ++v  v+  ++   ++++   r+ W ++++     + 
     hg01171   568 ----IVLDPLKATHAVKGVTGHEVCNYFWNVDV-RNDWETTIE----NFH 608  

                   vvevissgtGgnrngviyhyvaksvapgpvsPtRDfvfvRywreddeH.R
                   vve++ ++      ++i+++++k+v+  p s  RD++++  +r+    + 
     hg01171   609 VVETLADN------AIIIYQTHKRVW--PASQ-RDVLYLSVIRKIPALtE 649  

                   alvdgsyvivsvSvthetspptGpssgvvRaellpsgllieplgngpek.
                    ++ + ++++  Sv+h++ p    + ++vRa++ + +++ ++l  +pe +
     hg01171   650 -NDPETWIVCNFSVDHDSAPL---NNRCVRAKINVAMIC-QTLVSPPEGn 694  

                   .....ddvkskvtwvsqaDlkGwlPvvhwllrsliksglaefaktRDsva
                   ++ ++d   +k+t+v +++++Gw P    +lr++ k+++++f+k+  ++ 
     hg01171   695 qeisrDNILCKITYVANVNPGGWAP--ASVLRAVAKREYPKFLKR--FTS 740  

                   tlqkscek<-*
                   ++q+ ++    
     hg01171   741 YVQEKTAG    748  

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