hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-02012999/chunk_1/iprscan-20080812-02012999.nocrc
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Query sequence: hg01279
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF01039.12.ls  Carboxyl transferase domain              991.7   2.4e-295   1
PF01039.12.fs  Carboxyl transferase domain              989.9   8.7e-295   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF01039.12.fs    1/1      59   543 ..     1   584 []   989.9 8.7e-295
PF01039.12.ls    1/1      59   543 ..     1   584 []   991.7 2.4e-295

Alignments of top-scoring domains:
PF01039.12.fs: domain 1 of 1, from 59 to 543: score 989.9, E = 8.7e-295
                   *->kavkTkqhpkGkltareRidlLldpGSpFgEledlafhrvtefglqa
                      ++++ +qh++GkltareRi lLldpGS F+E +++++hr+++fg++a
     hg01279    59    RRID-AQHKRGKLTARERISLLLDPGS-FVESDMFVEHRCADFGMAA 103  

                   dkrglPgdGVvTGsGaidGravevfaqDftvfGGslgpahgfKYlYitka
                   dk+++Pgd+VvTG+G+i+Gr v+vf+qDftvfGGsl+ ah++K   i+k+
     hg01279   104 DKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK---ICKI 150  

                   melAikansVatehvveesGaPliginDSgGAedgGPRIqeGvesLaGyG
                   m++Ai++            GaP+ig+nDSgGA     RIqeGvesLaGy+
     hg01279   151 MDQAITV------------GAPVIGLNDSGGA-----RIQEGVESLAGYA 183  

                   lIFgrnsraSgvIPQIslimGpcaGGGaYsPaLtdfiimVkdptspmFlT
                   +IF rn++aSgvIPQIslimGpcaGG++YsPaLtdf++mVkd ts++F+T
     hg01279   184 DIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKD-TSYLFIT 232  

                   GPdvikkVtGREevtseeLGGadqHmaksGvaHltaeddedAlalirkll
                   GPdv+k+Vt  E+vt+eeLGGa++H++ sGvaH ++e+d dAl++ r+++
     hg01279   233 GPDVVKSVTN-EDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFF 281  

                   SyLPkkrsnnmeppPivetgDppdrsveelrtdDLlvsivPddpnkPYDv
                   +yLP    + ++p+P++e++Dp dr v+el+      +ivP +++k+Y++
     hg01279   282 NYLP---LSSQDPAPVRECHDPSDRLVPELD------TIVPLESTKAYNM 322  

                   RevIarivDedgkkwlGlFDegeFlEikagyAkniVtGfARlgGipVGiV
                    ++I+ +vD           e eF+Ei+++yAkni++GfAR++G++VGiV
     hg01279   323 VDIIHSVVD-----------EREFFEIMPNYAKNIIVGFARMNGRTVGIV 361  

                   ANqprTvEnviPADPAnpdSkEavivlAGQvLdidSadKaArFirfCdag
                   +Nqp+                    v++G +Ldi+S++K+ArF+rfCda 
     hg01279   362 GNQPK--------------------VASG-CLDINSSVKGARFVRFCDA- 389  

                   fnIPLviLvDvpGFlpGtdqEygGIirhGAkllyAlaeAtVPkitvItRm
                   fnIPL+++vDvpGFlpGt+qEygGIirhGAkllyA+aeAtVPk+tvItR 
     hg01279   390 FNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITR- 438  

                   GkaYGGayvVMdskilgaDlveMYfawPtArIAVMGpeGAveIlfrkela
                    kaYGGay+VM+sk+l+ D++   +awPtA+IAVMG++GAveI+f+    
     hg01279   439 -KAYGGAYDVMSSKHLCGDTN---YAWPTAEIAVMGAKGAVEIIFKG--- 481  

                   aaamerlDptykdlealLeklseaqedrkqkiaeyeeqlanPYvaaargf
                                 ++            ++ +aey e++anP+ aa+rgf
     hg01279   482 --------------HEN----------VEAAQAEYIEKFANPFPAAVRGF 507  

                   vDdvIdPgetRaklvialallwtkrrrffpwrkhgni<-*
                   vDd+I P+ tRa++++ l +l++k++      +h++    
     hg01279   508 VDDIIQPSSTRARICCDLDVLASKKV-RVQEVFHQVV    543  

PF01039.12.ls: domain 1 of 1, from 59 to 543: score 991.7, E = 2.4e-295
                   *->kavkTkqhpkGkltareRidlLldpGSpFgEledlafhrvtefglqa
                      ++++ +qh++GkltareRi lLldpGS F+E +++++hr+++fg++a
     hg01279    59    RRID-AQHKRGKLTARERISLLLDPGS-FVESDMFVEHRCADFGMAA 103  

                   dkrglPgdGVvTGsGaidGravevfaqDftvfGGslgpahgfKYlYitka
                   dk+++Pgd+VvTG+G+i+Gr v+vf+qDftvfGGsl+ ah++K   i+k+
     hg01279   104 DKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQK---ICKI 150  

                   melAikansVatehvveesGaPliginDSgGAedgGPRIqeGvesLaGyG
                   m++Ai++            GaP+ig+nDSgGA     RIqeGvesLaGy+
     hg01279   151 MDQAITV------------GAPVIGLNDSGGA-----RIQEGVESLAGYA 183  

                   lIFgrnsraSgvIPQIslimGpcaGGGaYsPaLtdfiimVkdptspmFlT
                   +IF rn++aSgvIPQIslimGpcaGG++YsPaLtdf++mVkd ts++F+T
     hg01279   184 DIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKD-TSYLFIT 232  

                   GPdvikkVtGREevtseeLGGadqHmaksGvaHltaeddedAlalirkll
                   GPdv+k+Vt  E+vt+eeLGGa++H++ sGvaH ++e+d dAl++ r+++
     hg01279   233 GPDVVKSVTN-EDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFF 281  

                   SyLPkkrsnnmeppPivetgDppdrsveelrtdDLlvsivPddpnkPYDv
                   +yLP    + ++p+P++e++Dp dr v+el+      +ivP +++k+Y++
     hg01279   282 NYLP---LSSQDPAPVRECHDPSDRLVPELD------TIVPLESTKAYNM 322  

                   RevIarivDedgkkwlGlFDegeFlEikagyAkniVtGfARlgGipVGiV
                    ++I+ +vD           e eF+Ei+++yAkni++GfAR++G++VGiV
     hg01279   323 VDIIHSVVD-----------EREFFEIMPNYAKNIIVGFARMNGRTVGIV 361  

                   ANqprTvEnviPADPAnpdSkEavivlAGQvLdidSadKaArFirfCdag
                   +Nqp+                    v++G +Ldi+S++K+ArF+rfCda 
     hg01279   362 GNQPK--------------------VASG-CLDINSSVKGARFVRFCDA- 389  

                   fnIPLviLvDvpGFlpGtdqEygGIirhGAkllyAlaeAtVPkitvItRm
                   fnIPL+++vDvpGFlpGt+qEygGIirhGAkllyA+aeAtVPk+tvItR 
     hg01279   390 FNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITR- 438  

                   GkaYGGayvVMdskilgaDlveMYfawPtArIAVMGpeGAveIlfrkela
                    kaYGGay+VM+sk+l+ D++   +awPtA+IAVMG++GAveI+f+    
     hg01279   439 -KAYGGAYDVMSSKHLCGDTN---YAWPTAEIAVMGAKGAVEIIFKG--- 481  

                   aaamerlDptykdlealLeklseaqedrkqkiaeyeeqlanPYvaaargf
                                 ++            ++ +aey e++anP+ aa+rgf
     hg01279   482 --------------HEN----------VEAAQAEYIEKFANPFPAAVRGF 507  

                   vDdvIdPgetRaklvialallwtkrrrffpwrkhgni<-*
                   vDd+I P+ tRa++++ l +l++k++      +h++    
     hg01279   508 VDDIIQPSSTRARICCDLDVLASKKV-RVQEVFHQVV    543  

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