hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-17375243/chunk_1/iprscan-20090630-17375243.nocrc
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Query sequence: hg01394s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01822.10.fs WSC domain                                     160.8    3.1e-52   2
PF01822.10.ls WSC domain                                     152.3    1.2e-42   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01822.10.fs   1/2     189   268 ..     1    87 []   125.1  1.3e-40
PF01822.10.ls   1/2     189   268 ..     1    87 []   127.0  4.8e-35
PF01822.10.fs   2/2     292   359 ..     1    72 [.    35.7  1.8e-11
PF01822.10.ls   2/2     292   374 ..     1    87 []    25.3  2.5e-05

Alignments of top-scoring domains:
PF01822.10.fs: domain 1 of 2, from 189 to 268: score 125.1, E = 1.3e-40
                   *->YlGCysdnsngpartlaaqtygdg.dmTveaCqafCasaGyayAGle
                      Y+GC+sd+++   rtl++++++d ++mTv++Cq++Ca+++y yAGle
   hg01394s1   189    YIGCFSDDGHE--RTLKGAVFYDLrKMTVSHCQDACAERSYVYAGLE 233  

                   yggeCyCGnslpsgtgpatkvdesqCnmtCaGdppseiCGG<-*
                   +g eCyCGn+lp     a +v+ ++Cn+ C+G+ + ++CG+   
   hg01394s1   234 AGAECYCGNRLP-----AVSVGLEECNHECKGE-KGSVCGA    268  

PF01822.10.ls: domain 1 of 2, from 189 to 268: score 127.0, E = 4.8e-35
                   *->YlGCysdnsngpartlaaqtygdg.dmTveaCqafCasaGyayAGle
                      Y+GC+sd+++   rtl++++++d ++mTv++Cq++Ca+++y yAGle
   hg01394s1   189    YIGCFSDDGHE--RTLKGAVFYDLrKMTVSHCQDACAERSYVYAGLE 233  

                   yggeCyCGnslpsgtgpatkvdesqCnmtCaGdppseiCGG<-*
                   +g eCyCGn+lp     a +v+ ++Cn+ C+G+ + ++CG+   
   hg01394s1   234 AGAECYCGNRLP-----AVSVGLEECNHECKGE-KGSVCGA    268  

PF01822.10.fs: domain 2 of 2, from 292 to 359: score 35.7, E = 1.8e-11
                   *->YlGCysdnsngpartlaaqtygdgdmTveaCqafCasaGyayAGley
                      Y+GC++   n ++++ ++  +++   Tv +C+ fC+++++++A+l  
   hg01394s1   292    YRGCFRLPENITHAFPSSLIQAN--VTVGTCSGFCSQKEFPLAILR- 335  

                   ggeCyCGnslpsgtgpatkvdesqC<-*
                   g eCyC  + p+++      d+s C   
   hg01394s1   336 GWECYCAYPTPRFNL-RDAMDSSVC    359  

PF01822.10.ls: domain 2 of 2, from 292 to 374: score 25.3, E = 2.5e-05
                   *->YlGCysdnsngpartlaaqtygdgdmTveaCqafCasaGyayAGley
                      Y+GC++   n ++++ ++  +++   Tv +C+ fC+++++++A+l  
   hg01394s1   292    YRGCFRLPENITHAFPSSLIQAN--VTVGTCSGFCSQKEFPLAILR- 335  

                   ggeCyCGnslpsgtgpatkvdesqCnmtCaGdpp.seiCGG<-*
                   g eCyC  + p+++      d+s C +        +e+C     
   hg01394s1   336 GWECYCAYPTPRFNL-RDAMDSSVCGQDPEAQ-RlAEYCEV    374  

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