hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-17375243/chunk_1/iprscan-20090630-17375243.nocrc
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Query sequence: hg01394s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00321                                                 297.2    1.2e-84   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00321    1/2     186   278 ..     1   103 []   157.1  1.8e-42
SM00321    2/2     289   384 ..     1   103 []   140.2  2.2e-37

Alignments of top-scoring domains:
SM00321: domain 1 of 2, from 186 to 278: score 157.1, E = 1.8e-42
                   *->gatYvGCysdddvssrtlaakssyayhsSnmsveaCYqnfCaskGya
                      + tY+GC+sdd+ ++rtl+++++y+ ++  m+v++C q++Ca+++y 
   hg01394s1   186    RGTYIGCFSDDG-HERTLKGAVFYDLRK--MTVSHC-QDACAERSYV 228  

                   lAaLengneCYCGdslpstsvsdeddssqCstkCsGplypaevCGGpsrl
                   +A+Le+g+eCYCG++lp++sv      ++C+++C+G  ++++vCG+ +rl
   hg01394s1   229 YAGLEAGAECYCGNRLPAVSVG----LEECNHECKG--EKGSVCGAVDRL 272  

                   svYvla<-*
                   svY+ +   
   hg01394s1   273 SVYRVD    278  

SM00321: domain 2 of 2, from 289 to 384: score 140.2, E = 2.2e-37
                   *->gatYvGCysdddvssrtlaakssyayhsSnmsveaCYqnfCaskGya
                      +atY+GC++ +  +++t+a++ss+++++  ++v++C + fC++k+++
   hg01394s1   289    TATYRGCFRLP--ENITHAFPSSLIQAN--VTVGTC-SGFCSQKEFP 330  

                   lAaLengneCYCGdslpstsvsdeddssqCstkCsGplypaevCGGpsrl
                   lA+L+ g+eCYC++++p+++++d++dss C+++++++ ++ae+C++++++
   hg01394s1   331 LAILR-GWECYCAYPTPRFNLRDAMDSSVCGQDPEAQ-RLAEYCEVYQTP 378  

                   svYvla<-*
                   ++++++   
   hg01394s1   379 VQDTRC    384  

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