hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-02183533/chunk_1/iprscan-20080812-02183533.nocrc
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Query sequence: hg01629
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                  264.7    4.2e-78   1
PF00621.11.ls RhoGEF domain                                  266.5      5e-77   1
PF00169.19.fs PH domain                                       46.8    8.8e-14   1
PF00169.19.ls PH domain                                       48.8    1.7e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00621.11.fs   1/1     481   656 ..     1   207 []   264.7  4.2e-78
PF00621.11.ls   1/1     481   656 ..     1   207 []   266.5    5e-77
PF00169.19.fs   1/1     687   791 ..     1    92 []    46.8  8.8e-14
PF00169.19.ls   1/1     687   791 ..     1    92 []    48.8  1.7e-11

Alignments of top-scoring domains:
PF00621.11.fs: domain 1 of 1, from 481 to 656: score 264.7, E = 4.2e-78
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaiss.kplLtpddieti
                      vl+El++TE++Yvr+L++++ +y+++++++++++ +p+L +++++++
     hg01629   481    VLNELIQTERVYVRELYTVLLGYRAEMDNPEMFDlMPPLLRNKKDIL 527  

                   FsNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel
                   F+N+++iyefh+++++ssLe+++++              ++r+G++Fle+
     hg01629   528 FGNMAEIYEFHNDIFLSSLENCAHA--------------PERVGPCFLER 563  

                   kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAk
                   k++f q+Y++Yc+nkp+++++++k    +s+++F+++++++ ++      
     hg01629   564 KDDF-QMYAKYCQNKPRSETIWRK----YSECAFFQECQRKLKH------ 602  

                   ddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkald
                       +l+L+s+LlkPvqRi++Y+LLLkeLLk+++   d+++s++Lkkald
     hg01629   603 ----RLRLDSYLLKPVQRITKYQLLLKELLKYSK---DCEGSALLKKALD 645  

                   alqdlaksiNe<-*
                   a+ dl+ks+N+   
     hg01629   646 AMLDLLKSVND    656  

PF00621.11.ls: domain 1 of 1, from 481 to 656: score 266.5, E = 5e-77
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaiss.kplLtpddieti
                      vl+El++TE++Yvr+L++++ +y+++++++++++ +p+L +++++++
     hg01629   481    VLNELIQTERVYVRELYTVLLGYRAEMDNPEMFDlMPPLLRNKKDIL 527  

                   FsNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel
                   F+N+++iyefh+++++ssLe+++++              ++r+G++Fle+
     hg01629   528 FGNMAEIYEFHNDIFLSSLENCAHA--------------PERVGPCFLER 563  

                   kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAk
                   k++f q+Y++Yc+nkp+++++++k    +s+++F+++++++ ++      
     hg01629   564 KDDF-QMYAKYCQNKPRSETIWRK----YSECAFFQECQRKLKH------ 602  

                   ddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkald
                       +l+L+s+LlkPvqRi++Y+LLLkeLLk+++   d+++s++Lkkald
     hg01629   603 ----RLRLDSYLLKPVQRITKYQLLLKELLKYSK---DCEGSALLKKALD 645  

                   alqdlaksiNe<-*
                   a+ dl+ks+N+   
     hg01629   646 AMLDLLKSVND    656  

PF00169.19.fs: domain 1 of 1, from 687 to 791: score 46.8, E = 8.8e-14
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk...........
                       +k+G  ++k  ++ ++ +R+++L ++ ++++k + ++++++++ ++
     hg01629   687    GHKKGATKMKDlARFKPMQRHLFLYEKAIVFCKRRVesgegsdryps 733  

                   kkpkgsipLsgiqvtkvpdnkrkncFeirt.dr.etlllqaeseeerkeW
                   ++ k+++ ++++ +t+++++ ++  Fei+ ++++e++++qa++ + + +W
     hg01629   734 YSFKHCWKMDEVGITEYVKG-DNRKFEIWYgEKeEVYIVQASNVDVKMTW 782  

                   vkaiqsair<-*
                   +k i++ +    
     hg01629   783 LKEIRNILL    791  

PF00169.19.ls: domain 1 of 1, from 687 to 791: score 48.8, E = 1.7e-11
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk...........
                       +k+G  ++k  ++ ++ +R+++L ++ ++++k + ++++++++ ++
     hg01629   687    GHKKGATKMKDlARFKPMQRHLFLYEKAIVFCKRRVesgegsdryps 733  

                   kkpkgsipLsgiqvtkvpdnkrkncFeirt.dr.etlllqaeseeerkeW
                   ++ k+++ ++++ +t+++++ ++  Fei+ ++++e++++qa++ + + +W
     hg01629   734 YSFKHCWKMDEVGITEYVKG-DNRKFEIWYgEKeEVYIVQASNVDVKMTW 782  

                   vkaiqsair<-*
                   +k i++ +    
     hg01629   783 LKEIRNILL    791  

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