hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-02245600/chunk_1/iprscan-20080812-02245600.nocrc
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Query sequence: hg01676
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00054                                                  55.9    5.2e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00054    1/2     385   413 ..     1    29 []    30.4  0.00024
SM00054    2/2     421   449 ..     1    29 []    25.5   0.0076

Alignments of top-scoring domains:
SM00054: domain 1 of 2, from 385 to 413: score 30.4, E = 0.00024
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       ++ +F+++DkDg+G+++f Ef+++l  +   
     hg01676   385    FVESMFSLADKDGNGYLSFREFLDILVVF    413  

SM00054: domain 2 of 2, from 421 to 449: score 25.5, E = 0.0076
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      + + +F ++D D +G+++++Ef ++++s+   
     hg01676   421    KSRLMFTMYDLDENGFLSKDEFFTMMRSF    449  

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