hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-17441992/chunk_1/iprscan-20090630-17441992.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hg02120s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 219.4 2e-64 1 PF00620.17.ls RhoGAP domain 221.3 2e-63 1 PF00611.13.fs Fes/CIP4 homology domain 82.5 1.1e-23 1 PF00611.13.ls Fes/CIP4 homology domain 84.4 3.2e-22 1 PF00018.18.fs SH3 domain 52.6 1.3e-13 1 PF00018.18.ls SH3 domain 54.5 3.2e-13 1 PF07653.7.fs Variant SH3 domain 39.2 1.2e-10 1 PF07653.7.ls Variant SH3 domain 40.9 3.9e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00611.13.fs 1/1 56 154 .. 1 107 [] 82.5 1.1e-23 PF00611.13.ls 1/1 56 154 .. 1 107 [] 84.4 3.2e-22 PF00620.17.ls 1/1 530 683 .. 1 155 [] 221.3 2e-63 PF00620.17.fs 1/1 530 683 .. 1 155 [] 219.4 2e-64 PF00018.18.fs 1/1 757 811 .. 1 59 [] 52.6 1.3e-13 PF00018.18.ls 1/1 757 811 .. 1 59 [] 54.5 3.2e-13 PF07653.7.ls 1/1 758 811 .. 1 69 [] 40.9 3.9e-09 PF07653.7.fs 1/1 758 811 .. 1 69 [] 39.2 1.2e-10 Alignments of top-scoring domains: PF00611.13.fs: domain 1 of 1, from 56 to 154: score 82.5, E = 1.1e-23 *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk ++++++l ++++k+L+++ +++l+ll+dl++F+r++a+iE eY+++ hg02120s1 56 KEIRTQL--VEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRS 100 LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls L+kl++++ +k R +s + ++k++ ls++ ++w +l +t ++s hg02120s1 101 LEKLAERFSSKIR-----SSREHQFKKDQYLLSPV-NCWYLVLHQTRRES 144 klHsqlseqL<-* ++H +l +++ hg02120s1 145 RDHATLNDIF 154 PF00611.13.ls: domain 1 of 1, from 56 to 154: score 84.4, E = 3.2e-22 *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk ++++++l ++++k+L+++ +++l+ll+dl++F+r++a+iE eY+++ hg02120s1 56 KEIRTQL--VEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRS 100 LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls L+kl++++ +k R +s + ++k++ ls++ ++w +l +t ++s hg02120s1 101 LEKLAERFSSKIR-----SSREHQFKKDQYLLSPV-NCWYLVLHQTRRES 144 klHsqlseqL<-* ++H +l +++ hg02120s1 145 RDHATLNDIF 154 PF00620.17.ls: domain 1 of 1, from 530 to 683: score 221.3, E = 2e-63 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Pl+ve+Ci+++ +GL+++GI+Rv+Gs+ +++ +++ f+rged+ hg02120s1 530 PLVVESCIRYINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVD 576 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea d +e d+++vA++LKl++R L +PL+++e ++++i +k+e++ er++ hg02120s1 577 DQNERDINSVAGVLKLYFRGLENPLFPKERFQDLIS-TIKLENPAERVHQ 625 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr ++++l +LP++ ++ryL+a+Ln+ +q+s++N+M+++NLAi+FgPtL++ hg02120s1 626 IQQILVTLPRVVIVVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMH 675 ppdgdsad<-* pdg+ + hg02120s1 676 IPDGQDPV 683 PF00620.17.fs: domain 1 of 1, from 530 to 683: score 219.4, E = 2e-64 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Pl+ve+Ci+++ +GL+++GI+Rv+Gs+ +++ +++ f+rged+ hg02120s1 530 PLVVESCIRYINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVD 576 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea d +e d+++vA++LKl++R L +PL+++e ++++i +k+e++ er++ hg02120s1 577 DQNERDINSVAGVLKLYFRGLENPLFPKERFQDLIS-TIKLENPAERVHQ 625 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr ++++l +LP++ ++ryL+a+Ln+ +q+s++N+M+++NLAi+FgPtL++ hg02120s1 626 IQQILVTLPRVVIVVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMH 675 ppdgdsad<-* pdg+ + hg02120s1 676 IPDGQDPV 683 PF00018.18.fs: domain 1 of 1, from 757 to 811: score 52.6, E = 1.3e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A++DY++r++ ELsFkkG + + + + +WW+gr + G hg02120s1 757 IEAIAKFDYMGRSPRELSFKKGASLLLYHRASE-DWWEGRHN---GV 799 eGliPsNYVepv<-* GliP++Y+ hg02120s1 800 DGLIPHQYIVVQ 811 PF00018.18.ls: domain 1 of 1, from 757 to 811: score 54.5, E = 3.2e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A++DY++r++ ELsFkkG + + + + +WW+gr + G hg02120s1 757 IEAIAKFDYMGRSPRELSFKKGASLLLYHRASE-DWWEGRHN---GV 799 eGliPsNYVepv<-* GliP++Y+ hg02120s1 800 DGLIPHQYIVVQ 811 PF07653.7.ls: domain 1 of 1, from 758 to 811: score 40.9, E = 3.9e-09 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a +dy + ++++e Ls+kkG + ++ + +++wwe hg02120s1 758 EAIAKFDYMG-RSPRE------LSFKKGASLLLY----HRASEDWWE 793 geslggGrrrRGlvPssaveel<-* g+ +G+ Gl+P++++ ++ hg02120s1 794 GRH--NGVD--GLIPHQYIVVQ 811 PF07653.7.fs: domain 1 of 1, from 758 to 811: score 39.2, E = 1.2e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a +dy + ++++e Ls+kkG + ++ + +++wwe hg02120s1 758 EAIAKFDYMG-RSPRE------LSFKKGASLLLY----HRASEDWWE 793 geslggGrrrRGlvPssaveel<-* g+ +G+ Gl+P++++ ++ hg02120s1 794 GRH--NGVD--GLIPHQYIVVQ 811 //