hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-15010327/chunk_1/iprscan-20090618-15010327.nocrc
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Query sequence: hg02209
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00118.14.ls TCP-1/cpn60 chaperonin family                -59.5    1.8e-07   1
PF00118.14.fs TCP-1/cpn60 chaperonin family                 15.0    0.00033   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00118.14.ls   1/1      31   572 .]     1   537 []   -59.5  1.8e-07

Alignments of top-scoring domains:
PF00118.14.ls: domain 1 of 1, from 31 to 572: score -59.5, E = 1.8e-07
                   *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen
                      l +iv +++GP Gr K l+ng  G +  T+   + l+++ + hP   
     hg02209    31    LKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLVTHP--- 74   

                   lgAkllveaskkQddevGDGTTtvvvLAgeLLkeaekLinaGlhPtqIir
                      k+l   +++    + D   ++++L++ L+++ + L   Gl Pt +ir
     hg02209    75 -ILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRL---GLTPTTVIR 120  

                   GyelAaekaleaLkkls....ipvetndk...inkeellkvAktslnsKv
                     ++ +  ++++Lk+   + +ipv+  +++++i +  +++++++  ++ +
     hg02209   121 LNKHLLSLCISYLKSETcgcrIPVD--FSstqILLCLVRSILTSKPACML 168  

                   isgnsiadAlakvgvdavitveeekndk.ysfdldnievvkglGgsifds
                   +  + ++  ++ +   a++   +e+ ++++   +  i  +kg    ++ds
     hg02209   169 TRKETEH--VSALILRAFLLTIPENAEGhIILGKSLIVPLKG--QRVIDS 214  

                   glisGyvitkeerhpvelempkrlendaKIavlncpLeiLelktetkrpl
                   +++ G+ i   e+ + +l  +k+     K+a++   L+   + + t+ ++
     hg02209   215 TVLPGILIEMSEVQLMRLLPIKKSTA-LKVALFCTTLS--GDTSDTGEGT 261  

                   viiasdedleaLstlEenklkgkvkviavkkRvcdgpnvvitqkegidDi
                   v ++  ++le+   +++++l +   ++++       +++v++qk +i+  
     hg02209   262 VVVSYGVSLEN---AVLDQLLNLGRQLISD-----HVDLVLCQK-VIHPS 302  

                   AlhtladtvisdkagImalrrvskedlgrlakvlgakvvttligpgagse
                     ++l+      ++ I+a+ r+  + ++ l+k +g+ ++ +l ++     
     hg02209   303 LKQFLN------MHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSIC---- 342  

                   deeeiGerdevlekeigdstsddkvtkleerkarLsgkvatIllRGatev
                    +   G+++ v + ++g+      + ++    +     ++++ll   +++
     hg02209   343 -PNSYGSVKDVCTAKFGS------KHFFHLIPN--EATICSLLLCNRNDT 383  

                   eldElerrieDAlnavkaaiedgriVPGGGaaEielakaLdkyk......
                     dEl+     Al++   +++++  + GGG++E +la +++ + ++++++
     hg02209   384 AWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAYIRHKThndpes 433  

                   .....akslegkeqlaveafakALeviPkiLAeNAGldgidviskLraeh
                     +++ ++   + ql +eaf +ALe      +    +dg +++++++  h
     hg02209   434 ilkddECT-QTELQLIAEAFCSALES----VVGSLEHDGGEILTDMKYGH 478  

                   akGns.....................................dlknyGyd
                      +s + +++   + ++  ++ + +  +++++ + +  +++  +++   
     hg02209   479 L--WSvqadspcvanwpdllsqcgcglynsqeelnwsflrstRRPFVPQS 526  

                   aatgkivdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-*
                   ++  + v  +++  +D l  k ++l+ A+e+A+liL    +I +k    
     hg02209   527 CLPHEAVGSASNLTLDCLTAKLSGLQVAVETANLILDLSYVIEDKN    572  

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