# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohg02275.fasta.nr -Q hg02275.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hg02275, 156 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842808 sequences Expectation_n fit: rho(ln(x))= 4.8873+/-0.00018; mu= 8.2650+/- 0.010 mean_var=59.9612+/-11.664, 0's: 34 Z-trim: 35 B-trim: 0 in 0/67 Lambda= 0.165630 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087602|dbj|BAD92248.1| neuraminidase precurso ( 156) 1065 262.0 2.2e-68 gi|119623942|gb|EAX03537.1| sialidase 1 (lysosomal ( 225) 1022 251.8 3.7e-65 gi|158255368|dbj|BAF83655.1| unnamed protein produ ( 415) 1022 252.0 6.1e-65 gi|75055015|sp|Q5RAF4.1|NEUR1_PONAB Sialidase-1 pr ( 415) 1022 252.0 6.1e-65 gi|30585327|gb|AAP36936.1| Homo sapiens sialidase ( 416) 1022 252.0 6.1e-65 gi|48145551|emb|CAG32998.1| NEU1 [Homo sapiens] ( 415) 1016 250.6 1.6e-64 gi|109070530|ref|XP_001113418.1| PREDICTED: neuram ( 416) 1015 250.3 1.9e-64 gi|55725707|emb|CAH89635.1| hypothetical protein [ ( 415) 1009 248.9 5.2e-64 gi|158513331|sp|A5PF10.1|NEUR1_PIG Sialidase-1 pre ( 416) 969 239.3 4e-61 gi|73972316|ref|XP_538838.2| PREDICTED: similar to ( 415) 963 237.9 1.1e-60 gi|149732352|ref|XP_001491874.1| PREDICTED: simila ( 415) 958 236.7 2.4e-60 gi|158514216|sp|A6BMK7.2|NEUR1_BOVIN Sialidase-1 p ( 415) 951 235.0 7.8e-60 gi|149676186|dbj|BAF64705.1| neuraminidase [Bos ta ( 415) 946 233.9 1.8e-59 gi|30962165|emb|CAD91185.1| neuraminidase 1 protei ( 210) 911 225.3 3.4e-57 gi|149028017|gb|EDL83468.1| neuraminidase 1, isofo ( 246) 911 225.3 3.8e-57 gi|148694774|gb|EDL26721.1| neuraminidase 1, isofo ( 388) 911 225.5 5.6e-57 gi|17367967|sp|O35657|NEUR1_MOUSE Sialidase-1 prec ( 409) 911 225.5 5.8e-57 gi|46237598|emb|CAE83976.1| neuraminidase 1 [Rattu ( 409) 911 225.5 5.8e-57 gi|13435578|gb|AAH04666.1| Neuraminidase 1 [Mus mu ( 409) 907 224.5 1.1e-56 gi|2731441|gb|AAC53536.1| lysosomal sialidase [Mus ( 409) 904 223.8 1.8e-56 gi|17367382|sp|Q99PW3.1|NEUR1_RAT Sialidase-1 prec ( 409) 903 223.6 2.2e-56 gi|126309690|ref|XP_001376295.1| PREDICTED: simila ( 467) 842 209.0 5.9e-52 gi|47118726|gb|AAT11276.1| neurominidase precursor ( 116) 771 191.7 2.5e-47 gi|49257582|gb|AAH74168.1| MGC81958 protein [Xenop ( 398) 607 152.8 4.2e-35 gi|94733404|emb|CAK04566.1| novel protein similar ( 383) 578 145.9 4.9e-33 gi|148372014|gb|ABQ62949.1| Neu1 [Takifugu rubripe ( 393) 548 138.7 7.3e-31 gi|109070534|ref|XP_001113467.1| PREDICTED: neuram ( 357) 531 134.6 1.1e-29 gi|47206156|emb|CAF91888.1| unnamed protein produc ( 240) 518 131.4 7e-29 gi|32264590|gb|AAP78741.1| neuraminidase-like 2 [B ( 224) 500 127.1 1.3e-27 gi|115733067|ref|XP_790369.2| PREDICTED: hypotheti ( 380) 491 125.1 8.9e-27 gi|20302773|gb|AAM18894.1|AF391295_3 unknown [Bran ( 365) 478 122.0 7.4e-26 gi|146332451|gb|ABQ22731.1| sialidase 1 precursor- ( 70) 459 117.0 4.5e-25 gi|66866259|gb|AAY57798.1| neuraminidase [Bos taur ( 57) 359 93.0 6e-18 gi|156217036|gb|EDO37960.1| predicted protein [Nem ( 423) 342 89.5 5.1e-16 gi|163778448|gb|EDQ92063.1| predicted protein [Mon ( 357) 304 80.4 2.4e-13 gi|163772664|gb|EDQ86314.1| predicted protein [Mon ( 439) 202 56.1 6.1e-06 gi|116222498|gb|ABJ81207.1| Exo-alpha-sialidase [S ( 358) 191 53.4 3.2e-05 gi|133914290|emb|CAM04403.1| neuraminidase [Saccha ( 616) 193 54.0 3.6e-05 gi|87287248|gb|EAQ79149.1| Sialidase (precursor) [ ( 383) 190 53.2 4e-05 gi|154088249|gb|EDN87294.1| hypothetical protein P ( 375) 185 52.0 9e-05 gi|115763456|ref|XP_001189772.1| PREDICTED: simila ( 63) 168 47.4 0.00036 gi|115953205|ref|XP_001182792.1| PREDICTED: simila ( 66) 168 47.4 0.00037 gi|148842980|gb|EDL57349.1| Sialidase (Precursor) ( 385) 170 48.4 0.0011 gi|29609267|dbj|BAC73318.1| putative neuraminidase ( 403) 168 47.9 0.0016 gi|29609596|dbj|BAC73646.1| putative neuraminidase ( 357) 167 47.7 0.0017 gi|32443699|emb|CAD73141.1| Sialidase [Precursor] ( 409) 167 47.7 0.0019 gi|163772400|gb|EDQ86053.1| predicted protein [Mon ( 445) 162 46.5 0.0047 gi|126576699|gb|EAZ80947.1| putative neuramidase [ ( 388) 160 46.0 0.0058 gi|88710170|gb|EAR02402.1| secreted sialidase [Fla ( 378) 158 45.5 0.0079 >>gi|62087602|dbj|BAD92248.1| neuraminidase precursor va (156 aa) initn: 1065 init1: 1065 opt: 1065 Z-score: 1382.8 bits: 262.0 E(): 2.2e-68 Smith-Waterman score: 1065; 100.000% identity (100.000% similar) in 156 aa overlap (1-156:1-156) 10 20 30 40 50 60 hg0227 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRSYDACDTLRPRDVTFDPELVDPVVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRSYDACDTLRPRDVTFDPELVDPVVA 10 20 30 40 50 60 70 80 90 100 110 120 hg0227 AGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTSWRKETVQLWPGPSGYSSLATLEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTSWRKETVQLWPGPSGYSSLATLEGS 70 80 90 100 110 120 130 140 150 hg0227 MDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL :::::::::::::::::::::::::::::::::::: gi|620 MDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL 130 140 150 >>gi|119623942|gb|EAX03537.1| sialidase 1 (lysosomal sia (225 aa) initn: 1022 init1: 1022 opt: 1022 Z-score: 1325.0 bits: 251.8 E(): 3.7e-65 Smith-Waterman score: 1022; 100.000% identity (100.000% similar) in 150 aa overlap (7-156:76-225) 10 20 30 hg0227 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRS :::::::::::::::::::::::::::::: gi|119 HGASWRYGSGVSGIPYGQPKQENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRS 50 60 70 80 90 100 40 50 60 70 80 90 hg0227 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS 110 120 130 140 150 160 100 110 120 130 140 150 hg0227 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL 170 180 190 200 210 220 >>gi|158255368|dbj|BAF83655.1| unnamed protein product [ (415 aa) initn: 1022 init1: 1022 opt: 1022 Z-score: 1321.1 bits: 252.0 E(): 6.1e-65 Smith-Waterman score: 1022; 100.000% identity (100.000% similar) in 150 aa overlap (7-156:266-415) 10 20 30 hg0227 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRS :::::::::::::::::::::::::::::: gi|158 HGASWRYGSGVSGIPYGQPKQENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRS 240 250 260 270 280 290 40 50 60 70 80 90 hg0227 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS 300 310 320 330 340 350 100 110 120 130 140 150 hg0227 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL 360 370 380 390 400 410 >>gi|75055015|sp|Q5RAF4.1|NEUR1_PONAB Sialidase-1 precur (415 aa) initn: 1022 init1: 1022 opt: 1022 Z-score: 1321.1 bits: 252.0 E(): 6.1e-65 Smith-Waterman score: 1022; 100.000% identity (100.000% similar) in 150 aa overlap (7-156:266-415) 10 20 30 hg0227 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRS :::::::::::::::::::::::::::::: gi|750 HGASWRYGSGVSGIPYGQPKQENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRS 240 250 260 270 280 290 40 50 60 70 80 90 hg0227 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS 300 310 320 330 340 350 100 110 120 130 140 150 hg0227 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL 360 370 380 390 400 410 >>gi|30585327|gb|AAP36936.1| Homo sapiens sialidase 1 (l (416 aa) initn: 1022 init1: 1022 opt: 1022 Z-score: 1321.1 bits: 252.0 E(): 6.1e-65 Smith-Waterman score: 1022; 100.000% identity (100.000% similar) in 150 aa overlap (7-156:266-415) 10 20 30 hg0227 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRS :::::::::::::::::::::::::::::: gi|305 HGASWRYGSGVSGIPYGQPKQENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRS 240 250 260 270 280 290 40 50 60 70 80 90 hg0227 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS 300 310 320 330 340 350 100 110 120 130 140 150 hg0227 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL 360 370 380 390 400 410 gi|305 L >>gi|48145551|emb|CAG32998.1| NEU1 [Homo sapiens] (415 aa) initn: 1016 init1: 1016 opt: 1016 Z-score: 1313.4 bits: 250.6 E(): 1.6e-64 Smith-Waterman score: 1016; 99.333% identity (99.333% similar) in 150 aa overlap (7-156:266-415) 10 20 30 hg0227 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRS :::::::::::::::::::::::::::::: gi|481 HGASWRYGSGVSGIPYGQPKQENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRS 240 250 260 270 280 290 40 50 60 70 80 90 hg0227 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|481 YDACDTLRPRDVTFDPELVDPVVPAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS 300 310 320 330 340 350 100 110 120 130 140 150 hg0227 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL 360 370 380 390 400 410 >>gi|109070530|ref|XP_001113418.1| PREDICTED: neuraminid (416 aa) initn: 1015 init1: 1015 opt: 1015 Z-score: 1312.0 bits: 250.3 E(): 1.9e-64 Smith-Waterman score: 1015; 98.667% identity (100.000% similar) in 150 aa overlap (7-156:267-416) 10 20 30 hg0227 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRS :::::::::::::::::::::::::::::: gi|109 HGASWRYGSGVSGIPYGQPKRENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRS 240 250 260 270 280 290 40 50 60 70 80 90 hg0227 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS 300 310 320 330 340 350 100 110 120 130 140 150 hg0227 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL :::::::::::::::::::::::.::::::::::::::::::::::::::.::::::::: gi|109 WRKETVQLWPGPSGYSSLATLEGTMDGEEQAPQLYVLYEKGRNHYTESISMAKISVYGTL 360 370 380 390 400 410 >>gi|55725707|emb|CAH89635.1| hypothetical protein [Pong (415 aa) initn: 1009 init1: 1009 opt: 1009 Z-score: 1304.3 bits: 248.9 E(): 5.2e-64 Smith-Waterman score: 1009; 98.667% identity (99.333% similar) in 150 aa overlap (7-156:266-415) 10 20 30 hg0227 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRS :::::::::::::::::::::::::::::: gi|557 HGASWRYGSGVSGIPYGQPKHENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRS 240 250 260 270 280 290 40 50 60 70 80 90 hg0227 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|557 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNPTLRWSFSNGTS 300 310 320 330 340 350 100 110 120 130 140 150 hg0227 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|557 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISMAKISVYGTL 360 370 380 390 400 410 >>gi|158513331|sp|A5PF10.1|NEUR1_PIG Sialidase-1 precurs (416 aa) initn: 969 init1: 969 opt: 969 Z-score: 1252.6 bits: 239.3 E(): 4e-61 Smith-Waterman score: 969; 93.333% identity (99.333% similar) in 150 aa overlap (7-156:267-416) 10 20 30 hg0227 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRS ::::::::::::::::::::::.::::::: gi|158 HGASWRYGSGISGIPYGQPKRENDFNPDECQPYELPDGSVVINARNQNNYHCRCRIVLRS 240 250 260 270 280 290 40 50 60 70 80 90 hg0227 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS ::::::::::::::::::::::::::::.:::::.::::::::::::::::::::::::: gi|158 YDACDTLRPRDVTFDPELVDPVVAAGAVATSSGIIFFSNPAHPEFRVNLTLRWSFSNGTS 300 310 320 330 340 350 100 110 120 130 140 150 hg0227 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL :::::::.::::::::::::::::. ::.::::::::::::::.::::::.::.:::::: gi|158 WRKETVQIWPGPSGYSSLATLEGSVGGEDQAPQLYVLYEKGRNRYTESISLAKVSVYGTL 360 370 380 390 400 410 >>gi|73972316|ref|XP_538838.2| PREDICTED: similar to Sia (415 aa) initn: 963 init1: 963 opt: 963 Z-score: 1244.9 bits: 237.9 E(): 1.1e-60 Smith-Waterman score: 963; 92.000% identity (99.333% similar) in 150 aa overlap (7-156:266-415) 10 20 30 hg0227 GPVLSPQPYELPDGSVVINARNQNNYHCHCRIVLRS :::::::::::::::::::::::::::::: gi|739 HGASWRYGSGVSGIPYGQPKRENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRS 240 250 260 270 280 290 40 50 60 70 80 90 hg0227 YDACDTLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTS ::::::.:::::::::::::::::::::.:.::.:::::::::::::::::::::::::: gi|739 YDACDTIRPRDVTFDPELVDPVVAAGAVATGSGLVFFSNPAHPEFRVNLTLRWSFSNGTS 300 310 320 330 340 350 100 110 120 130 140 150 hg0227 WRKETVQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL :::::::::::::::::::.::::. :..::::::::::::::.::::::.::.:::::: gi|739 WRKETVQLWPGPSGYSSLAALEGSVGGKDQAPQLYVLYEKGRNQYTESISLAKVSVYGTL 360 370 380 390 400 410 156 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 02:41:28 2008 done: Tue Aug 12 02:44:30 2008 Total Scan time: 584.340 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]