hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-02510993/chunk_1/iprscan-20080812-02510993.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hg02374 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06512.3.fs Sodium ion transport-associated 452.1 2.9e-188 1 PF00520.21.ls Ion transport protein 627.5 1.1e-185 3 PF00520.21.fs Ion transport protein 622.0 4.6e-184 3 PF06512.3.ls Sodium ion transport-associated 454.0 1.8e-133 1 PF08016.2.fs Polycystin cation channel 22.7 6.6e-07 3 PF00612.17.ls IQ calmodulin-binding motif 20.1 0.0075 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00520.21.fs 1/3 330 517 .. 1 224 [] 203.0 6.5e-58 PF00520.21.ls 1/3 330 517 .. 1 224 [] 204.8 1.8e-58 PF06512.3.ls 1/1 530 793 .. 1 278 [] 454.0 1.8e-133 PF06512.3.fs 1/1 530 793 .. 1 278 [] 452.1 2.9e-188 PF00520.21.fs 2/3 819 1029 .. 1 224 [] 209.5 7.2e-60 PF00520.21.ls 2/3 819 1029 .. 1 224 [] 211.3 2.1e-60 PF00520.21.ls 3/3 1122 1331 .. 1 224 [] 211.4 1.9e-60 PF00520.21.fs 3/3 1122 1331 .. 1 224 [] 209.6 6.8e-60 PF00612.17.ls 1/1 1462 1482 .. 1 21 [] 20.1 0.0075 Alignments of top-scoring domains: PF00520.21.fs: domain 1 of 3, from 330 to 517: score 203.0, E = 6.5e-58 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl + ++vft+iFt+Em +kiial + ++Y++ +wNi+D ++v+ hg02374 330 VGNLVFTGIFTAEMTFKIIALDP-------YYYFQQGWNIFDSIIVI 369 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR +sl++l ls + + lsvlr++RllR hg02374 370 LSLMELGLSRMSN-----------------------LSVLRSFRLLR--- 393 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig +++l++ +p+ l+tl ++++g+s+++l+n++l+l++++fiFa++g hg02374 394 VFKLAKSWPT-----LNTL--IKIIGNSVGALGNLTLVLAIIVFIFAVVG 436 vqlFggklnkcc...npingntnFdsfgnaflwlFqtmTteGwgdvmpdt +qlFg+++ + +++ + +++++++f++afl F+++++e w++ m+d+ hg02374 437 MQLFGKNYSELRdsdSGLLPRWHMMDFFHAFLIIFRILCGE-WIETMWDC 485 l..agtvlgyiyfvsfiilgsflllNLfiavi<-* ++ +g l+ ++f++++++g++++lNLf+a++ hg02374 486 MevSGQSLCLLVFLLVMVIGNLVVLNLFLALL 517 PF00520.21.ls: domain 1 of 3, from 330 to 517: score 204.8, E = 1.8e-58 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl + ++vft+iFt+Em +kiial + ++Y++ +wNi+D ++v+ hg02374 330 VGNLVFTGIFTAEMTFKIIALDP-------YYYFQQGWNIFDSIIVI 369 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR +sl++l ls + + lsvlr++RllR hg02374 370 LSLMELGLSRMSN-----------------------LSVLRSFRLLR--- 393 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig +++l++ +p+ l+tl ++++g+s+++l+n++l+l++++fiFa++g hg02374 394 VFKLAKSWPT-----LNTL--IKIIGNSVGALGNLTLVLAIIVFIFAVVG 436 vqlFggklnkcc...npingntnFdsfgnaflwlFqtmTteGwgdvmpdt +qlFg+++ + +++ + +++++++f++afl F+++++e w++ m+d+ hg02374 437 MQLFGKNYSELRdsdSGLLPRWHMMDFFHAFLIIFRILCGE-WIETMWDC 485 l..agtvlgyiyfvsfiilgsflllNLfiavi<-* ++ +g l+ ++f++++++g++++lNLf+a++ hg02374 486 MevSGQSLCLLVFLLVMVIGNLVVLNLFLALL 517 PF06512.3.ls: domain 1 of 1, from 530 to 793: score 454.0, E = 1.8e-133 *->DGEmekNNLQIAvaRIkrGIafVkshKrtlrefickkFlrrknepkp D++ e+NNLQ+A+aRI+rG++fV Krt+++f+c+ lr+++ +++ hg02374 530 DEDREMNNLQLALARIQRGLRFV---KRTTWDFCCGL-LRQRPQKPA 572 keateskklscagnnkdeitpelrklplarKenpgdkttsgiggqvgvpk + a++++++sc++ + ++++pe++k+p+ rKe +++++ + +gq g+p hg02374 573 ALAAQGQLPSCIATPYSPPPPETEKVPPTRKE--TRFEEGEQPGQ-GTP- 618 tlGvrddetvLvPiaeeeDdmefignd..sslgtsqespVGesqfedlpt +d e+v+vPia++e+d++++++d+++slgt++es+ +++++ ++ hg02374 619 ----GDPEPVCVPIAVAESDTDDQEEDeeNSLGTEEESS--KQESQPVSG 662 enkr.etssdaesvetevfSeedlelsiqdskkklDatSsAPGCGETPED + + +++s+++++v+++++Se ++++s++d++++++a+++APGCGETPED hg02374 663 GPEApPDSRTWSQVSATASSEAEASASQADWRQQWKAEPQAPGCGETPED 712 SsSEGSTvDyllkpe.dpeEeeqVEtvEpkEldPEaCFTEGCVrRFPCCq S+SEGST+D +++ +++E+++ + ++ +dPE+CFTEGCVrR+PCC hg02374 713 SCSEGSTAD--MTNTaELLEQIP-DLGQDV-KDPEDCFTEGCVRRCPCCA 758 VditeGpGKiWWnLRKTCYrIVEHsWFETFIIFMI<-* Vd+t++pGK+WW+LRKTCY+IVEHsWFETFIIFMI hg02374 759 VDTTQAPGKVWWRLRKTCYHIVEHSWFETFIIFMI 793 PF06512.3.fs: domain 1 of 1, from 530 to 793: score 452.1, E = 2.9e-188 *->DGEmekNNLQIAvaRIkrGIafVkshKrtlrefickkFlrrknepkp D++ e+NNLQ+A+aRI+rG++fV Krt+++f+c+ lr+++ +++ hg02374 530 DEDREMNNLQLALARIQRGLRFV---KRTTWDFCCGL-LRQRPQKPA 572 keateskklscagnnkdeitpelrklplarKenpgdkttsgiggqvgvpk + a++++++sc++ + ++++pe++k+p+ rKe +++++ + +gq g+p hg02374 573 ALAAQGQLPSCIATPYSPPPPETEKVPPTRKE--TRFEEGEQPGQ-GTP- 618 tlGvrddetvLvPiaeeeDdmefignd..sslgtsqespVGesqfedlpt +d e+v+vPia++e+d++++++d+++slgt++es+ +++++ ++ hg02374 619 ----GDPEPVCVPIAVAESDTDDQEEDeeNSLGTEEESS--KQESQPVSG 662 enkr.etssdaesvetevfSeedlelsiqdskkklDatSsAPGCGETPED + + +++s+++++v+++++Se ++++s++d++++++a+++APGCGETPED hg02374 663 GPEApPDSRTWSQVSATASSEAEASASQADWRQQWKAEPQAPGCGETPED 712 SsSEGSTvDyllkpe.dpeEeeqVEtvEpkEldPEaCFTEGCVrRFPCCq S+SEGST+D +++ +++E+++ + ++ +dPE+CFTEGCVrR+PCC hg02374 713 SCSEGSTAD--MTNTaELLEQIP-DLGQDV-KDPEDCFTEGCVRRCPCCA 758 VditeGpGKiWWnLRKTCYrIVEHsWFETFIIFMI<-* Vd+t++pGK+WW+LRKTCY+IVEHsWFETFIIFMI hg02374 759 VDTTQAPGKVWWRLRKTCYHIVEHSWFETFIIFMI 793 PF00520.21.fs: domain 2 of 3, from 819 to 1029: score 209.5, E = 7.2e-60 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++d ft +F+lEmllk++a+gf +kY++++w++lDfl+v hg02374 819 YADKMFTYVFVLEMLLKWVAYGF-------KKYFTNAWCWLDFLIVD 858 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR +sl+sl+ +lg ++ +++lR+lR+LR hg02374 859 VSLVSLVANTLGF---------------------AEMGPIKSLRTLRALR 887 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig +lr+++r++g +r++ +n+l+ +++s++nvll++l++++iF+i+g hg02374 888 PLRALSRFEG-----MRVV--VNALVGAIPSIMNVLLVCLIFWLIFSIMG 930 vqlFggklnkcc.............................npingntnF v+lF gk+ +c++ ++++ + + + ++++ +++ + +++ + + + nF hg02374 931 VNLFAGKFGRCInqtegdlplnytivnnksqceslnltgelYWTKVKVNF 980 dsfgnaflwlFqtmTteGwgdvmpdtlagtvlgyiyfvsfiilgsflllN d++g ++l+l+ ++ +++ ++ +++ ++yiyfv+fii+gsf++lN hg02374 981 DNVGAGYLALL----QV-YEEQPQW--EYNLYMYIYFVIFIIFGSFFTLN 1023 Lfiavi<-* Lfi+vi hg02374 1024 LFIGVI 1029 PF00520.21.ls: domain 2 of 3, from 819 to 1029: score 211.3, E = 2.1e-60 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++d ft +F+lEmllk++a+gf +kY++++w++lDfl+v hg02374 819 YADKMFTYVFVLEMLLKWVAYGF-------KKYFTNAWCWLDFLIVD 858 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR +sl+sl+ +lg ++ +++lR+lR+LR hg02374 859 VSLVSLVANTLGF---------------------AEMGPIKSLRTLRALR 887 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig +lr+++r++g +r++ +n+l+ +++s++nvll++l++++iF+i+g hg02374 888 PLRALSRFEG-----MRVV--VNALVGAIPSIMNVLLVCLIFWLIFSIMG 930 vqlFggklnkcc.............................npingntnF v+lF gk+ +c++ ++++ + + + ++++ +++ + +++ + + + nF hg02374 931 VNLFAGKFGRCInqtegdlplnytivnnksqceslnltgelYWTKVKVNF 980 dsfgnaflwlFqtmTteGwgdvmpdtlagtvlgyiyfvsfiilgsflllN d++g ++l+l+ ++ +++ ++ +++ ++yiyfv+fii+gsf++lN hg02374 981 DNVGAGYLALL----QV-YEEQPQW--EYNLYMYIYFVIFIIFGSFFTLN 1023 Lfiavi<-* Lfi+vi hg02374 1024 LFIGVI 1029 PF00520.21.ls: domain 3 of 3, from 1122 to 1331: score 211.4, E = 1.9e-60 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++++f++iFt E+++k+ al+ ++Y+++ wNi+Df+vv+ hg02374 1122 KINLLFVAIFTGECIVKLAALR--------HYYFTNSWNIFDFVVVI 1160 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL +s+++ +ls d++++++ sp+l++v+rl R+ R hg02374 1161 LSIVGTVLS----------------DIIQKYsFSPTLFRVIRLARIGR-- 1192 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii +lrlir+a+g +rtl l++l++sl++l+n++lll+l++fi++i+ hg02374 1193 -ILRLIRGAKG-----IRTL--LFALMMSLPALFNIGLLLFLVMFIYSIF 1234 gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl. g+ F ++ k++ +i++ +nF++f n++l+lFq+ T+ Gw +++ +l+ hg02374 1235 GMANFAYV--KWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILn 1282 ....................agtvlgyiyfvsfiilgsflllNLfiavi< ++++ +++ +++++++++ ++ ++g+++f ++ii++ ++++N++ia+i hg02374 1283 tgppycdptlpnsngsrgdcGSPAVGILFFTTYIIISFLIVVNMYIAII 1331 -* hg02374 - - PF00520.21.fs: domain 3 of 3, from 1122 to 1331: score 209.6, E = 6.8e-60 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++++f++iFt E+++k+ al+ ++Y+++ wNi+Df+vv+ hg02374 1122 KINLLFVAIFTGECIVKLAALR--------HYYFTNSWNIFDFVVVI 1160 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL +s+++ +ls d++++++ sp+l++v+rl R+ R hg02374 1161 LSIVGTVLS----------------DIIQKYsFSPTLFRVIRLARIGR-- 1192 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii +lrlir+a+g +rtl l++l++sl++l+n++lll+l++fi++i+ hg02374 1193 -ILRLIRGAKG-----IRTL--LFALMMSLPALFNIGLLLFLVMFIYSIF 1234 gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl. g+ F ++ k++ +i++ +nF++f n++l+lFq+ T+ Gw +++ +l+ hg02374 1235 GMANFAYV--KWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILn 1282 ....................agtvlgyiyfvsfiilgsflllNLfiavi< ++++ +++ +++++++++ ++ ++g+++f ++ii++ ++++N++ia+i hg02374 1283 tgppycdptlpnsngsrgdcGSPAVGILFFTTYIIISFLIVVNMYIAII 1331 -* hg02374 - - PF00612.17.ls: domain 1 of 1, from 1462 to 1482: score 20.1, E = 0.0075 *->rraaikIQaawRGylaRkryk<-* + +a++IQ+a+R++l + +k hg02374 1462 EVSAMVIQRAFRRHLLQRSLK 1482 //