hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-16370942/chunk_1/iprscan-20090416-16370942.nocrc
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Query sequence: hg02529
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07686.7.fs Immunoglobulin V-set domain                     20.9      2e-05   1
PF07686.7.ls Immunoglobulin V-set domain                     22.7    0.00025   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07686.7.fs   1/1      63   179 ..     1   141 []    20.9    2e-05
PF07686.7.ls   1/1      63   179 ..     1   141 []    22.7  0.00025

Alignments of top-scoring domains:
PF07686.7.fs: domain 1 of 1, from 63 to 179: score 20.9, E = 2e-05
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      ++   + +++            +v++ +G +v+L+C +    ++s  
     hg02529    63    SLRADT-QEK------------EVRAMVGSDVELSCACP---EGSRF 93   

                   ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls
                   + ++ ++yW   q++ ++    +     +  +++   +v +r+++r  +s
     hg02529    94 DLNDVYVYW---QTSESKTVVTY-----HIPQNSSLENVDSRYRNRALMS 135  

                   gnps.kgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-*
                   + +  +gdfsL++ n+++ D+   +C v +   l f++   + V+   
     hg02529   136 PAGMlRGDFSLRLFNVTPQDEQKFHCLVLSQ-SLGFQEVLSVEVT    179  

PF07686.7.ls: domain 1 of 1, from 63 to 179: score 22.7, E = 0.00025
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      ++   + +++            +v++ +G +v+L+C +    ++s  
     hg02529    63    SLRADT-QEK------------EVRAMVGSDVELSCACP---EGSRF 93   

                   ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls
                   + ++ ++yW   q++ ++    +     +  +++   +v +r+++r  +s
     hg02529    94 DLNDVYVYW---QTSESKTVVTY-----HIPQNSSLENVDSRYRNRALMS 135  

                   gnps.kgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-*
                   + +  +gdfsL++ n+++ D+   +C v +   l f++   + V+   
     hg02529   136 PAGMlRGDFSLRLFNVTPQDEQKFHCLVLSQ-SLGFQEVLSVEVT    179  

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