hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090428/iprscan-20090428-18194855/chunk_1/iprscan-20090428-18194855.nocrc
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Query sequence: hg02934s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         261.2      2e-75  16
PF00096.16.fs Zinc finger, C2H2 type                         229.3    7.8e-66  16

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   2/16    144   166 ..     1    24 []    18.8    0.019
PF00096.16.ls   3/16    256   280 ..     1    24 []    23.5   0.0007
PF00096.16.fs   7/16    382   406 ..     1    24 []    27.8  1.1e-05
PF00096.16.ls   7/16    382   406 ..     1    24 []    29.8  8.9e-06
PF00096.16.ls   8/16    673   698 ..     1    24 []    21.2   0.0035
PF00096.16.fs  11/16   1522  1547 ..     1    24 []    26.1    3e-05
PF00096.16.ls  11/16   1522  1547 ..     1    24 []    28.1  2.9e-05
PF00096.16.ls  15/16   1831  1856 ..     1    24 []    23.0    0.001

Alignments of top-scoring domains:
PF00096.16.ls: domain 2 of 16, from 144 to 166: score 18.8, E = 0.019
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+Cp +C k F++k+++  H   H   
   hg02934s1   144    YSCP-ICAKNFNSKETFVPHVTLH    166  

PF00096.16.ls: domain 3 of 16, from 256 to 280: score 23.5, E = 0.0007
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      + Cp++ C+k F+  +nL +H + H   
   hg02934s1   256    FNCPVtFCKKGFKYFKNLIAHVKGH    280  

PF00096.16.fs: domain 7 of 16, from 382 to 406: score 27.8, E = 1.1e-05
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+C+f++Cgk+++++++L++Hl  H   
   hg02934s1   382    YTCKFtGCGKVYRSQGELEKHLDDH    406  

PF00096.16.ls: domain 7 of 16, from 382 to 406: score 29.8, E = 8.9e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+C+f++Cgk+++++++L++Hl  H   
   hg02934s1   382    YTCKFtGCGKVYRSQGELEKHLDDH    406  

PF00096.16.ls: domain 8 of 16, from 673 to 698: score 21.2, E = 0.0035
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      ++C++++C ++++++ +  +H++t H   
   hg02934s1   673    FSCQVeGCTRTYNSSQSIGKHMKTaH    698  

PF00096.16.fs: domain 11 of 16, from 1522 to 1547: score 26.1, E = 3e-05
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      +kC ++ C k+F+r+snL++H +  H   
   hg02934s1  1522    FKCVVpTCTKTFTRNSNLRAHCQLvH    1547 

PF00096.16.ls: domain 11 of 16, from 1522 to 1547: score 28.1, E = 2.9e-05
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      +kC ++ C k+F+r+snL++H +  H   
   hg02934s1  1522    FKCVVpTCTKTFTRNSNLRAHCQLvH    1547 

PF00096.16.ls: domain 15 of 16, from 1831 to 1856: score 23.0, E = 0.001
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      ykC+ ++C++ + ++snL rH+  +H   
   hg02934s1  1831    YKCDCeGCDRIYATRSNLLRHIFNkH    1856 

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