hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090428/iprscan-20090428-18194855/chunk_1/iprscan-20090428-18194855.nocrc
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Query sequence: hg02934s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 297.7    8.7e-85  16

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/16    117   138 ..     1    23 []     6.1       64
SM00355      2/16    144   166 ..     1    23 []    21.5     0.12
SM00355      3/16    256   280 ..     1    23 []    19.7     0.41
SM00355      4/16    297   319 ..     1    23 []    20.9     0.18
SM00355      5/16    325   349 ..     1    23 []    17.9      1.4
SM00355      6/16    354   378 ..     1    23 []    12.4       13
SM00355      7/16    382   406 ..     1    23 []    29.6  0.00042
SM00355      8/16    673   698 ..     1    23 []    21.9     0.09
SM00355      9/16    950   970 ..     1    23 []     1.3  2.2e+02
SM00355     10/16   1477  1502 ..     1    23 []    22.7    0.051
SM00355     11/16   1522  1547 ..     1    23 []    22.6    0.055
SM00355     12/16   1689  1714 ..     1    23 []    19.2     0.56
SM00355     13/16   1747  1772 ..     1    23 []    20.8      0.2
SM00355     14/16   1791  1816 ..     1    23 []    16.3      4.3
SM00355     15/16   1831  1856 ..     1    23 []    24.6    0.014
SM00355     16/16   1961  1985 ..     1    23 []    20.0     0.33

Alignments of top-scoring domains:
SM00355: domain 1 of 16, from 117 to 138: score 6.1, E = 64
                   *->ykCpigCgksfsskaLkrHmrvH<-*
                        C + C+k f  +  +rH ++H   
   hg02934s1   117    QYCVL-CDKEFLGHRIVRHAQKH    138  

SM00355: domain 2 of 16, from 144 to 166: score 21.5, E = 0.12
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y Cpi C k f+sk+ ++ H+  H   
   hg02934s1   144    YSCPI-CAKNFNSKeTFVPHVTLH    166  

SM00355: domain 3 of 16, from 256 to 280: score 19.7, E = 0.41
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + Cp++ C+k f+  ++L+ H++ H   
   hg02934s1   256    FNCPVtFCKKGFKYFkNLIAHVKGH    280  

SM00355: domain 4 of 16, from 297 to 319: score 20.9, E = 0.18
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ C ++f s ++L+ H+++H   
   hg02934s1   297    VICQY-CRRHFVSVtHLNDHLQMH    319  

SM00355: domain 5 of 16, from 325 to 349: score 17.9, E = 1.4
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y C +  C+  f+s+ +L  H + H   
   hg02934s1   325    YICIQmKCKAGFNSYaELLTHRKEH    349  

SM00355: domain 6 of 16, from 354 to 378: score 12.4, E = 13
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                       kC ++ Cg+ fs +  L  H  +H   
   hg02934s1   354    AKCMFpKCGRIFSEAyLLYDHEAQH    378  

SM00355: domain 7 of 16, from 382 to 406: score 29.6, E = 0.00042
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y+C+++gCgk+++s+++L++H+  H   
   hg02934s1   382    YTCKFtGCGKVYRSQgELEKHLDDH    406  

SM00355: domain 8 of 16, from 673 to 698: score 21.9, E = 0.09
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      + C+++gC ++++s ++  +Hm++ H   
   hg02934s1   673    FSCQVeGCTRTYNSSqSIGKHMKtAH    698  

SM00355: domain 9 of 16, from 950 to 970: score 1.3, E = 2.2e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+  C + f+++++L  H+      
   hg02934s1   950    FICSR-CYRAFTNPrSLGGHLS--    970  

SM00355: domain 10 of 16, from 1477 to 1502: score 22.7, E = 0.051
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      ++C+ +gC++s  +k+aL +H+ ++H   
   hg02934s1  1477    FVCQNqGCNYSAMTKdALFKHYGkIH    1502 

SM00355: domain 11 of 16, from 1522 to 1547: score 22.6, E = 0.055
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      +kC ++ C k+f++ ++L+ H + vH   
   hg02934s1  1522    FKCVVpTCTKTFTRNsNLRAHCQlVH    1547 

SM00355: domain 12 of 16, from 1689 to 1714: score 19.2, E = 0.56
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      y+C ++gC   f+ +++L+ H++ vH   
   hg02934s1  1689    YRCVHqGCFAAFTIQqNLILHYQaVH    1714 

SM00355: domain 13 of 16, from 1747 to 1772: score 20.8, E = 0.2
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      ++C++++C++ f   + L++H+++ H   
   hg02934s1  1747    FRCQVsDCSRIFQAItGLIQHYMkLH    1772 

SM00355: domain 14 of 16, from 1791 to 1816: score 16.3, E = 4.3
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      + C++  C+ sf+++ +++ H+   H   
   hg02934s1  1791    FPCDQlECKSSFTTYlNYVVHLEaDH    1816 

SM00355: domain 15 of 16, from 1831 to 1856: score 24.6, E = 0.014
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      ykC+ +gC++ + ++++L rH+ ++H   
   hg02934s1  1831    YKCDCeGCDRIYATRsNLLRHIFnKH    1856 

SM00355: domain 16 of 16, from 1961 to 1985: score 20.0, E = 0.33
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y C i+gC  + +s+++ +rH++ H   
   hg02934s1  1961    YPCMIkGCTSVVTSEsNIIRHYKCH    1985 

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