hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-16373102/chunk_1/iprscan-20090525-16373102.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hg02982
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF02709.5.ls   Galactosyltransferase                    644.9   6.2e-191   1
PF02709.5.fs   Galactosyltransferase                    643.0   2.1e-190   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF02709.5.fs     1/1      89   356 .]     1   282 []   643.0 2.1e-190
PF02709.5.ls     1/1      89   356 .]     1   282 []   644.9 6.2e-191

Alignments of top-scoring domains:
PF02709.5.fs: domain 1 of 1, from 89 to 356: score 643.0, E = 2.1e-190
                   *->CPekspillLvGpllisfseiqflqLeevqsenPevepGGryrPkdC
                      CP++sp  +L+G+++++f+++  l+Leevq+enP+v++G ryrP++C
     hg02982    89    CPSVSP--YLRGQSKLIFKPD--LTLEEVQAENPKVSRG-RYRPQEC 130  

                   kpSrqKvAvIiPfRnReeHLryllyHLhPfLQRQrLdygiYVInQtGndt
                   k+ +q+vA+++P+RnRe+HL+yll+HLhPfLQRQ+LdygiYVI+Q+++++
     hg02982   131 KA-LQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKK 179  

                   FNRAkLlNVGFlEAlkegvaWDClvFhDVDLlPenDrNlYkCpeqPRHla
                   FNRAkLlNVG+lEAlke++ WDC++FhDVDL+PenD+NlYkC+e+P+Hl+
     hg02982   180 FNRAKLLNVGYLEALKEEN-WDCFIFHDVDLVPENDFNLYKCEEHPKHLV 228  

                   vamdkygYrLpYkeyfGGVsaLskeQfrKiNGFpNeYWGWGGEDDDlynR
                   v+++++gYrL+Y++yfGGV+aLs+eQf+K+NGF+N+YWGWGGEDDDl++R
     hg02982   229 VGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLR 278  

                   vilagmkIsRPeGpetGkYkmikHikGrdRgneYTpnpeRfklleksker
                   v+l++mkIsRP  pe+GkY+m++H+  rd+gne  +n+eR+kll++++++
     hg02982   279 VELQRMKISRPL-PEVGKYTMVFHT--RDKGNE--VNAERMKLLHQVSRV 323  

                   mavDGLnslrYqillkveldpLYtnITVdigalpe<-*
                   +++DGL+s++Y+ l++ve++pLY+nITVd++ +++   
     hg02982   324 WRTDGLSSCSYK-LVSVEHNPLYINITVDFW-FGA    356  

PF02709.5.ls: domain 1 of 1, from 89 to 356: score 644.9, E = 6.2e-191
                   *->CPekspillLvGpllisfseiqflqLeevqsenPevepGGryrPkdC
                      CP++sp  +L+G+++++f+++  l+Leevq+enP+v++G ryrP++C
     hg02982    89    CPSVSP--YLRGQSKLIFKPD--LTLEEVQAENPKVSRG-RYRPQEC 130  

                   kpSrqKvAvIiPfRnReeHLryllyHLhPfLQRQrLdygiYVInQtGndt
                   k+ +q+vA+++P+RnRe+HL+yll+HLhPfLQRQ+LdygiYVI+Q+++++
     hg02982   131 KA-LQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKK 179  

                   FNRAkLlNVGFlEAlkegvaWDClvFhDVDLlPenDrNlYkCpeqPRHla
                   FNRAkLlNVG+lEAlke++ WDC++FhDVDL+PenD+NlYkC+e+P+Hl+
     hg02982   180 FNRAKLLNVGYLEALKEEN-WDCFIFHDVDLVPENDFNLYKCEEHPKHLV 228  

                   vamdkygYrLpYkeyfGGVsaLskeQfrKiNGFpNeYWGWGGEDDDlynR
                   v+++++gYrL+Y++yfGGV+aLs+eQf+K+NGF+N+YWGWGGEDDDl++R
     hg02982   229 VGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLR 278  

                   vilagmkIsRPeGpetGkYkmikHikGrdRgneYTpnpeRfklleksker
                   v+l++mkIsRP  pe+GkY+m++H+  rd+gne  +n+eR+kll++++++
     hg02982   279 VELQRMKISRPL-PEVGKYTMVFHT--RDKGNE--VNAERMKLLHQVSRV 323  

                   mavDGLnslrYqillkveldpLYtnITVdigalpe<-*
                   +++DGL+s++Y+ l++ve++pLY+nITVd++ +++   
     hg02982   324 WRTDGLSSCSYK-LVSVEHNPLYINITVDFW-FGA    356  

//