hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-03033731/chunk_1/iprscan-20080812-03033731.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hg03448 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00084.11.ls Sushi domain (SCR repeat) 650.3 1.5e-192 11 PF00084.11.fs Sushi domain (SCR repeat) 639.5 2.6e-189 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00084.11.fs 2/12 44 104 .. 1 65 [] 45.3 1.2e-10 PF00084.11.ls 1/11 44 104 .. 1 65 [] 47.1 5.6e-11 PF00084.11.ls 2/11 108 161 .. 1 65 [] 56.7 7.2e-14 PF00084.11.fs 3/12 108 161 .. 1 65 [] 54.9 2.5e-13 PF00084.11.fs 4/12 167 224 .. 1 65 [] 57.7 3.5e-14 PF00084.11.ls 3/11 167 224 .. 1 65 [] 59.5 1e-14 PF00084.11.fs 5/12 228 283 .. 1 65 [] 54.2 3.9e-13 PF00084.11.ls 4/11 228 283 .. 1 65 [] 56.0 1.1e-13 PF00084.11.ls 5/11 288 342 .. 1 65 [] 59.1 1.3e-14 PF00084.11.fs 6/12 288 342 .. 1 65 [] 57.3 4.6e-14 PF00084.11.fs 7/12 349 403 .. 1 65 [] 70.7 4.3e-18 PF00084.11.ls 6/11 349 403 .. 1 65 [] 72.5 1.3e-18 PF00084.11.fs 8/12 410 463 .. 1 65 [] 68.6 1.9e-17 PF00084.11.ls 7/11 410 463 .. 1 65 [] 70.4 5.4e-18 PF00084.11.fs 9/12 472 522 .. 1 65 [] 25.7 1.2e-05 PF00084.11.ls 8/11 472 522 .. 1 65 [] 27.4 4.6e-05 PF00084.11.fs 10/12 530 583 .. 1 65 [] 55.3 1.9e-13 PF00084.11.ls 9/11 530 583 .. 1 65 [] 57.1 5.4e-14 PF00084.11.fs 11/12 589 645 .. 1 65 [] 69.8 8.2e-18 PF00084.11.ls 10/11 589 645 .. 1 65 [] 71.6 2.4e-18 PF00084.11.fs 12/12 650 703 .. 1 65 [] 71.1 3.3e-18 PF00084.11.ls 11/11 650 703 .. 1 65 [] 72.9 9.4e-19 Alignments of top-scoring domains: PF00084.11.fs: domain 2 of 12, from 44 to 104: score 45.3, E = 1.2e-10 *->CplppPdieNGrvsss...kttyeypvGdtvtytCneGYrlvG...s C+ Pdi +G +++ +++ ++++vG + +y+C+e++++ ++ + hg03448 44 CD--YPDIKHGGLYHEnmrRPYFPVAVGKYYSYYCDEHFETPSgsyW 88 ssitCtedggGgWsppllgelPkC<-* ++i+Ct d gWsp+ + C hg03448 89 DHIHCTQD---GWSPA-----VPC 104 PF00084.11.ls: domain 1 of 11, from 44 to 104: score 47.1, E = 5.6e-11 *->CplppPdieNGrvsss...kttyeypvGdtvtytCneGYrlvG...s C+ Pdi +G +++ +++ ++++vG + +y+C+e++++ ++ + hg03448 44 CD--YPDIKHGGLYHEnmrRPYFPVAVGKYYSYYCDEHFETPSgsyW 88 ssitCtedggGgWsppllgelPkC<-* ++i+Ct d gWsp+ + C hg03448 89 DHIHCTQD---GWSPA-----VPC 104 PF00084.11.ls: domain 2 of 11, from 108 to 161: score 56.7, E = 7.2e-14 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG.sssitC C +P +eNG+ +++++++ G ++ C++GY l +++tC hg03448 108 CY--FPYLENGYNQNYGRKFVQ--GKSIDVACHPGYALPKaQTTVTC 150 tedggGgWsppllgelPkC<-* +e+ gWsp+ P+C hg03448 151 MEN---GWSPT-----PRC 161 PF00084.11.fs: domain 3 of 12, from 108 to 161: score 54.9, E = 2.5e-13 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG.sssitC C +P +eNG+ +++++++ G ++ C++GY l +++tC hg03448 108 CY--FPYLENGYNQNYGRKFVQ--GKSIDVACHPGYALPKaQTTVTC 150 tedggGgWsppllgelPkC<-* +e+ gWsp+ P+C hg03448 151 MEN---GWSPT-----PRC 161 PF00084.11.fs: domain 4 of 12, from 167 to 224: score 57.7, E = 3.5e-14 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG...sssi C++++ dieNG++s+s+ ty ++++ y+C+ GY++ +++s+si hg03448 167 CSKSSIDIENGFISESQYTYAL--KEKAKYQCKLGYVTADgetSGSI 211 tCtedggGgWsppllgelPkC<-* tC++d gWs + P+C hg03448 212 TCGKD---GWSAQ-----PTC 224 PF00084.11.ls: domain 3 of 11, from 167 to 224: score 59.5, E = 1e-14 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG...sssi C++++ dieNG++s+s+ ty ++++ y+C+ GY++ +++s+si hg03448 167 CSKSSIDIENGFISESQYTYAL--KEKAKYQCKLGYVTADgetSGSI 211 tCtedggGgWsppllgelPkC<-* tC++d gWs + P+C hg03448 212 TCGKD---GWSAQ-----PTC 224 PF00084.11.fs: domain 5 of 12, from 228 to 283: score 54.2, E = 3.9e-13 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG...sssi C+ P+++N+r ++ +t ++ +dt+ y+C++GY+ + +++ +si hg03448 228 CD--IPVFMNARTKNDFTWFKL--NDTLDYECHDGYESNTgstTGSI 270 tCtedggGgWsppllgelPkC<-* +C+ + gWs + P+C hg03448 271 VCGYN---GWSDL-----PIC 283 PF00084.11.ls: domain 4 of 11, from 228 to 283: score 56.0, E = 1.1e-13 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG...sssi C+ P+++N+r ++ +t ++ +dt+ y+C++GY+ + +++ +si hg03448 228 CD--IPVFMNARTKNDFTWFKL--NDTLDYECHDGYESNTgstTGSI 270 tCtedggGgWsppllgelPkC<-* +C+ + gWs + P+C hg03448 271 VCGYN---GWSDL-----PIC 283 PF00084.11.ls: domain 5 of 11, from 288 to 342: score 59.1, E = 1.3e-14 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C +P+i+ + v ++k++y++ G+++ ++C++G+++vG++s++C hg03448 288 CE--LPKIDVHLVPDRkKDQYKV--GEVLKFSCKPGFTIVGPNSVQC 330 tedggGgWsppllgelPkC<-* +++ g sp l P+C hg03448 331 YHF---GLSPDL----PIC 342 PF00084.11.fs: domain 6 of 12, from 288 to 342: score 57.3, E = 4.6e-14 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C +P+i+ + v ++k++y++ G+++ ++C++G+++vG++s++C hg03448 288 CE--LPKIDVHLVPDRkKDQYKV--GEVLKFSCKPGFTIVGPNSVQC 330 tedggGgWsppllgelPkC<-* +++ g sp l P+C hg03448 331 YHF---GLSPDL----PIC 342 PF00084.11.fs: domain 7 of 12, from 349 to 403: score 70.7, E = 4.3e-18 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C+ ppP++ NG+v++++k++y + ++v+y+Cn+ + ++G++ i+C hg03448 349 CG-PPPELLNGNVKEKtKEEYGH--SEVVEYYCNPRFLMKGPNKIQC 392 tedggGgWsppllgelPkC<-* + d G+W+ + P+C hg03448 393 V-D--GEWTTL-----PVC 403 PF00084.11.ls: domain 6 of 11, from 349 to 403: score 72.5, E = 1.3e-18 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C+ ppP++ NG+v++++k++y + ++v+y+Cn+ + ++G++ i+C hg03448 349 CG-PPPELLNGNVKEKtKEEYGH--SEVVEYYCNPRFLMKGPNKIQC 392 tedggGgWsppllgelPkC<-* + d G+W+ + P+C hg03448 393 V-D--GEWTTL-----PVC 403 PF00084.11.fs: domain 8 of 12, from 410 to 463: score 68.6, E = 1.9e-17 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ + P++e+G + s++ y+y Gd+v++ C e ++++G++sitC+ hg03448 410 CG-DIPELEHGWAQLSSPPYYY--GDSVEFNCSESFTMIGHRSITCI 453 edggGgWsppllgelPkC<-* ++ W+++ P+C hg03448 454 HG---VWTQL-----PQC 463 PF00084.11.ls: domain 7 of 11, from 410 to 463: score 70.4, E = 5.4e-18 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ + P++e+G + s++ y+y Gd+v++ C e ++++G++sitC+ hg03448 410 CG-DIPELEHGWAQLSSPPYYY--GDSVEFNCSESFTMIGHRSITCI 453 edggGgWsppllgelPkC<-* ++ W+++ P+C hg03448 454 HG---VWTQL-----PQC 463 PF00084.11.fs: domain 9 of 12, from 472 to 522: score 25.7, E = 1.2e-05 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C+ + ++ + + ++k+++ + ++ ++y+C+ +G+ + +C hg03448 472 CK--SSNLIILEEHLKnKKEFDH--NSNIRYRCRGK---EGWIHTVC 511 tedggGgWsppllgelPkC<-* + + G+W+p+ + C hg03448 512 I-N--GRWDPE-----VNC 522 PF00084.11.ls: domain 8 of 11, from 472 to 522: score 27.4, E = 4.6e-05 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C+ + ++ + + ++k+++ + ++ ++y+C+ +G+ + +C hg03448 472 CK--SSNLIILEEHLKnKKEFDH--NSNIRYRCRGK---EGWIHTVC 511 tedggGgWsppllgelPkC<-* + + G+W+p+ + C hg03448 512 I-N--GRWDPE-----VNC 522 PF00084.11.fs: domain 10 of 12, from 530 to 583: score 55.3, E = 1.9e-13 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt Cp ppP+i+N + +++ +y+ G++v+ C+e Y +++ ++itC hg03448 530 CP-PPPQIPNSHNMTTTLNYRD--GEKVSVLCQENYLIQEGEEITCK 573 edggGgWsppllgelPkC<-* d G+W + P C hg03448 574 -D--GRWQSI-----PLC 583 PF00084.11.ls: domain 9 of 11, from 530 to 583: score 57.1, E = 5.4e-14 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt Cp ppP+i+N + +++ +y+ G++v+ C+e Y +++ ++itC hg03448 530 CP-PPPQIPNSHNMTTTLNYRD--GEKVSVLCQENYLIQEGEEITCK 573 edggGgWsppllgelPkC<-* d G+W + P C hg03448 574 -D--GRWQSI-----PLC 583 PF00084.11.fs: domain 11 of 12, from 589 to 645: score 69.8, E = 8.2e-18 *->CplppPdieNGrvsss...kttyeypvGdtvtytCneGYrlvGsssi C+ +pP+ie+G++ ss++++++y + G++++ytC+ G+r++++++ hg03448 589 CS-QPPQIEHGTINSSrssQESYAH--GTKLSYTCEGGFRISEENET 632 tCtedggGgWsppllgelPkC<-* tC+++ +Ws+p P+C hg03448 633 TCYMG---KWSSP-----PQC 645 PF00084.11.ls: domain 10 of 11, from 589 to 645: score 71.6, E = 2.4e-18 *->CplppPdieNGrvsss...kttyeypvGdtvtytCneGYrlvGsssi C+ +pP+ie+G++ ss++++++y + G++++ytC+ G+r++++++ hg03448 589 CS-QPPQIEHGTINSSrssQESYAH--GTKLSYTCEGGFRISEENET 632 tCtedggGgWsppllgelPkC<-* tC+++ +Ws+p P+C hg03448 633 TCYMG---KWSSP-----PQC 645 PF00084.11.fs: domain 12 of 12, from 650 to 703: score 71.1, E = 3.3e-18 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +pP+i +G v + +++y+y G+ vty+C eG+ + G++ ++C+ hg03448 650 CK-SPPEISHGVVAHMSDSYQY--GEEVTYKCFEGFGIDGPAIAKCL 693 edggGgWsppllgelPkC<-* + +Ws+p P+C hg03448 694 GE---KWSHP-----PSC 703 PF00084.11.ls: domain 11 of 11, from 650 to 703: score 72.9, E = 9.4e-19 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +pP+i +G v + +++y+y G+ vty+C eG+ + G++ ++C+ hg03448 650 CK-SPPEISHGVVAHMSDSYQY--GEEVTYKCFEGFGIDGPAIAKCL 693 edggGgWsppllgelPkC<-* + +Ws+p P+C hg03448 694 GE---KWSHP-----PSC 703 //